Public bug reported:

Looks like unattended-upgrades failed?

I just ran the update again and it installed an altered config file.

#> apt-get install ntpdate
Setting up ntpdate (1:4.2.6.p5+dfsg-3ubuntu2.14.04.10) ...

Configuration file '/etc/network/if-up.d/ntpdate'
 ==> Deleted (by you or by a script) since installation.
 ==> Package distributor has shipped an updated version.
   What would you like to do about it ?  Your options are:
    Y or I  : install the package maintainer's version
    N or O  : keep your currently-installed version
      D     : show the differences between the versions
      Z     : start a shell to examine the situation
 The default action is to keep your current version.
*** ntpdate (Y/I/N/O/D/Z) [default=N] ? y
Installing new version of config file /etc/network/if-up.d/ntpdate ...

ProblemType: Package
DistroRelease: Ubuntu 14.04
Package: ntpdate 1:4.2.6.p5+dfsg-3ubuntu2.14.04.10
ProcVersionSignature: Ubuntu 3.13.0-96.143-generic 3.13.11-ckt39
Uname: Linux 3.13.0-96-generic x86_64
NonfreeKernelModules: nvidia
ApportVersion: 2.14.1-0ubuntu3.18
Architecture: amd64
Date: Sun Oct  9 04:07:26 2016
DpkgHistoryLog:
 Start-Date: 2016-10-09  04:07:05
 Upgrade: chromium-codecs-ffmpeg-extra:amd64 
(52.0.2743.116-0ubuntu0.14.04.1.1134, 53.0.2785.143-0ubuntu0.14.04.1.1142), 
chromium-browser-l10n:amd64 (52.0.2743.116-0ubuntu0.14.04.1.1134, 
53.0.2785.143-0ubuntu0.14.04.1.1142), chromium-browser:amd64 
(52.0.2743.116-0ubuntu0.14.04.1.1134, 53.0.2785.143-0ubuntu0.14.04.1.1142), 
ntpdate:amd64 (4.2.6.p5+dfsg-3ubuntu2.14.04.5, 4.2.6.p5+dfsg-3ubuntu2.14.04.10)
DpkgTerminalLog: Log started: 2016-10-09  04:07:05
ErrorMessage: EOF on stdin at conffile prompt
InstallationDate: Installed on 2014-04-29 (894 days ago)
InstallationMedia: Ubuntu 14.04 LTS "Trusty Tahr" - Release amd64 (20140417)
RelatedPackageVersions:
 dpkg 1.17.5ubuntu5.6
 apt  1.0.1ubuntu2.13
SourcePackage: ntp
Title: package ntpdate 1:4.2.6.p5+dfsg-3ubuntu2.14.04.10 failed to 
install/upgrade: EOF on stdin at conffile prompt
UpgradeStatus: No upgrade log present (probably fresh install)

** Affects: ntp (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-package trusty

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https://bugs.launchpad.net/bugs/1631789

Title:
  package ntpdate 1:4.2.6.p5+dfsg-3ubuntu2.14.04.10 failed to
  install/upgrade: EOF on stdin at conffile prompt

Status in ntp package in Ubuntu:
  New

Bug description:
  Looks like unattended-upgrades failed?

  I just ran the update again and it installed an altered config file.

  #> apt-get install ntpdate
  Setting up ntpdate (1:4.2.6.p5+dfsg-3ubuntu2.14.04.10) ...

  Configuration file '/etc/network/if-up.d/ntpdate'
   ==> Deleted (by you or by a script) since installation.
   ==> Package distributor has shipped an updated version.
     What would you like to do about it ?  Your options are:
      Y or I  : install the package maintainer's version
      N or O  : keep your currently-installed version
        D     : show the differences between the versions
        Z     : start a shell to examine the situation
   The default action is to keep your current version.
  *** ntpdate (Y/I/N/O/D/Z) [default=N] ? y
  Installing new version of config file /etc/network/if-up.d/ntpdate ...

  ProblemType: Package
  DistroRelease: Ubuntu 14.04
  Package: ntpdate 1:4.2.6.p5+dfsg-3ubuntu2.14.04.10
  ProcVersionSignature: Ubuntu 3.13.0-96.143-generic 3.13.11-ckt39
  Uname: Linux 3.13.0-96-generic x86_64
  NonfreeKernelModules: nvidia
  ApportVersion: 2.14.1-0ubuntu3.18
  Architecture: amd64
  Date: Sun Oct  9 04:07:26 2016
  DpkgHistoryLog:
   Start-Date: 2016-10-09  04:07:05
   Upgrade: chromium-codecs-ffmpeg-extra:amd64 
(52.0.2743.116-0ubuntu0.14.04.1.1134, 53.0.2785.143-0ubuntu0.14.04.1.1142), 
chromium-browser-l10n:amd64 (52.0.2743.116-0ubuntu0.14.04.1.1134, 
53.0.2785.143-0ubuntu0.14.04.1.1142), chromium-browser:amd64 
(52.0.2743.116-0ubuntu0.14.04.1.1134, 53.0.2785.143-0ubuntu0.14.04.1.1142), 
ntpdate:amd64 (4.2.6.p5+dfsg-3ubuntu2.14.04.5, 4.2.6.p5+dfsg-3ubuntu2.14.04.10)
  DpkgTerminalLog: Log started: 2016-10-09  04:07:05
  ErrorMessage: EOF on stdin at conffile prompt
  InstallationDate: Installed on 2014-04-29 (894 days ago)
  InstallationMedia: Ubuntu 14.04 LTS "Trusty Tahr" - Release amd64 (20140417)
  RelatedPackageVersions:
   dpkg 1.17.5ubuntu5.6
   apt  1.0.1ubuntu2.13
  SourcePackage: ntp
  Title: package ntpdate 1:4.2.6.p5+dfsg-3ubuntu2.14.04.10 failed to 
install/upgrade: EOF on stdin at conffile prompt
  UpgradeStatus: No upgrade log present (probably fresh install)

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