Switching to ibus fixed it
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https://bugs.launchpad.net/bugs/1662617
Title:
gnome-calculator with transparent formula entry box
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I have similar error, however opening top-left menu fixes it until
window closing.
** Attachment added: "1.png"
https://bugs.launchpad.net/ubuntu/+source/gnome-calculator/+bug/1662617/+attachment/4862341/+files/1.png
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