As a workaround, it's possible to run pymol within a Xephyr.
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https://bugs.launchpad.net/bugs/1323618
Title:
Pymol not working.
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I'm using finch and want to be able to use skype messaging remotely via
terminal. Please increase the priority. Thanks!
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https://bugs.launchpad.net/bugs/1013609
Title:
Pidgin and Skype