I saw the same problem today on files that were automatically re-opened
when launching kile. Closing the files, restarting kile and opening the
files again helped.
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I have the same problem here, also with a Thinkpad X60s. This looks like
an old bug was reintroduced into the kernel. I've seen the same
behaviour some time ago, it was related to the sata controller timing
out, when trying to detect disks. See point 2 in
http://lkml.org/lkml/2006/1/12/461, I
