Hi all,
I couldn't help to notice that this package was not yet integrated in Lucid
Lynx...
http://packages.ubuntu.com/search?suite=lucidsearchon=nameskeywords=clustalx
Anything else we should do?
Thank you.
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https://bugs.launchpad.net/bugs/423648
You received
Hi,
Sorry for the late answer (my motherboard died more than one moth ago,
and I'm still trying to get a fully working env).
As far as I can tell, Charles uploaded a new version 2.1.12-2 that should fix
the FTBFS, so you should change the title and the description of the bug report
to reflect
Just out of curiosity, does the current version (1.83-4) build on Lucid?
Or does the latest version, built on karmic work on lucid?
I will also attempt to contact the author about this issue and see what can be
done.
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You
I have a reply from the author:
Hi Francisco,
The quoted compiler error is:
moc_AlignmentFormatOptions.cpp:14:2: error: #error This file was
generated using the moc from 4.5.0. It
moc_AlignmentFormatOptions.cpp:15:2: error: #error cannot be used with
the include files from this version of Qt.
Excellent! I added $(RM) moc_* to the clean target in debian/rules and
the package builds fine on Lucid:
https://launchpad.net/~plessy/+archive/plessy/+build/1472225
I will update the Debian package soon.
Have a nice day,
--
Charles
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Great news indeed!
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I have successfully built clustalx directly from source
(ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.0.12/clustalx-2.0.12.tar.gz)
using ubuntu karmic.
I have installed the following packages in order to build it: qt4-dev-tools;
build-essential; qt4-qmake.
I don't really know what the debian
Hi Stunts and Fabrice,
Indeed, libqt4-dev and other packages in Lucid are already in version
4.6 and clustalx does not like this. I confirmed in a PPA that clustalx
fails to build currently in Lucid
(https://launchpad.net/~plessy/+archive/plessy/+build/143).
About the patch (there is only
You really should sync this package from Unstable. The one currently in the
repository have a very clunky interface and is simply unsuitable for large
datasets, even on very fast machines.
Anything else I can do to help this getting into the repos?
Thank you.
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Hi,
When trying to build the version in unstable, I'm getting those errors:
g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB
-DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I.
-I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui
** Branch linked: lp:debian/sid/clustalx
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Hi,
For Lucid, we are syncing from Testing, and the new version has not yet
entered there. You should check why, and see if it's worth keeping the
actual version, or syncing from Unstable (with arguments :-) )
Thanks,
Fabrice
** Changed in: clustalx (Ubuntu)
Status: Incomplete = New
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Hi,
As we are way past Feature Freeze, please follow the Feature Freeze exception
process described at https://wiki.ubuntu.com/FreezeExceptionProcess.
Anyway, without a really good reason, it will be very complicated to have in
Karmic: we are one week from release :-) Otherwise, it will be
Fair enough. I'll just resubscribe this as soon as development for Lucid Lynx
starts.
It's not like it's a show stopper or anything. Better to have it up to date in
the long term support release anyway.
Thanks for your feedback anyway.
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Hello again, and thanks for your feedback Charles!
According to https://wiki.ubuntu.com/SyncRequestProcess here is the info that I
must provide for the syncing to take effect:
# Source package name
ClustalX
# Source package version number to sync
2.0.12-1
# Where to sync from (e.g. 'Debian sid
Dear Stunts,
I just updated the clustalx package in Debian. You can contact MOTUs to
request a sync.
Have a nice day,
--
Charles Plessy
Debian Med packaging team
http://www.debian.org/devel/debian/med
Tsurumi, Kanagawa, Japan.
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