I've been having the same issue since building a new system a couple
months ago. The frequency is inconsistent, but rarely happens more than
once per day. Sometimes I'll lose my keyboard mid-sentence, and other
times I won't be able to unlock the system in the morning.

Oddly, my USB mouse (a Razer Naga) always still works, and the side
buttons which act as a number pad also always work. However, by USB hub
loses power, and neither it nor my keyboard ever regain power or
functionality when re-plugging or switching ports. It's always fixed by
a reboot.

I'm on a Threadripper 3990x with an ASUS ROG Zenith II Extreme
motherboard.

Here's the snippet from /var/log/syslog:

Jan 14 19:37:19 amaranth systemd[1]: fprintd.service: Succeeded.
Jan 14 19:38:44 amaranth kernel: [37857.592954] xhci_hcd 0000:49:00.3: Mismatch 
between completed Set TR Deq Ptr command & xHCI internal state.
Jan 14 19:38:44 amaranth kernel: [37857.592957] xhci_hcd 0000:49:00.3: ep deq 
seg = 000000003ccd0405, deq ptr = 000000006daebfd1
Jan 14 19:38:45 amaranth kernel: [37858.593779] xhci_hcd 0000:49:00.3: AMD-Vi: 
Event logged [IO_PAGE_FAULT domain=0x0035 address=0x0 flags=0x0000]
Jan 14 19:38:50 amaranth kernel: [37863.667171] xhci_hcd 0000:49:00.3: xHCI 
host not responding to stop endpoint command.
Jan 14 19:38:50 amaranth kernel: [37863.667178] xhci_hcd 0000:49:00.3: xHCI 
host controller not responding, assume dead
Jan 14 19:38:50 amaranth kernel: [37863.667220] xhci_hcd 0000:49:00.3: HC died; 
cleaning up
Jan 14 19:38:50 amaranth kernel: [37863.667255] usb 9-3: USB disconnect, device 
number 2
Jan 14 19:38:50 amaranth kernel: [37863.667258] usb 9-3.1: USB disconnect, 
device number 4
Jan 14 19:38:50 amaranth kernel: [37863.667447] usb 10-3: USB disconnect, 
device number 2
Jan 14 19:38:50 amaranth kernel: [37863.667449] usb 10-3.2: USB disconnect, 
device number 4
Jan 14 19:38:50 amaranth kernel: [37863.667451] usb 10-3.2.4: USB disconnect, 
device number 5
Jan 14 19:38:50 amaranth kernel: [37863.668402] usb 10-4: USB disconnect, 
device number 3
Jan 14 19:38:50 amaranth kernel: [37863.735579] usb 9-3.2: USB disconnect, 
device number 6
Jan 14 19:38:50 amaranth kernel: [37863.735581] usb 9-3.2.3: USB disconnect, 
device number 7
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 17
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 8
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 9
Jan 14 19:38:50 amaranth kernel: [37863.979627] usb 9-3.2.4: USB disconnect, 
device number 9
Jan 14 19:38:50 amaranth kernel: [37863.979630] usb 9-3.2.4.4: USB disconnect, 
device number 10
Jan 14 19:38:50 amaranth kernel: [37864.076604] usb 9-4: USB disconnect, device 
number 3
Jan 14 19:38:50 amaranth kernel: [37864.076833] usb 9-5: USB disconnect, device 
number 5
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 7
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 10
Jan 14 19:38:50 amaranth kernel: [37864.231560] usb 9-6: USB disconnect, device 
number 8
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 11
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 12

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https://bugs.launchpad.net/bugs/1908894

Title:
  USB controllers disconnects after random time

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