[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-base (Debian) Status: Confirmed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-bioc-biocgenerics (Ubuntu) Status: Fix Committed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
This bug was fixed in the package r-base - 3.4.2-1ubuntu1 --- r-base (3.4.2-1ubuntu1) artful; urgency=medium * Cherry-pick fix calling methods on dots generics when call contains dots from upstream r73465 (LP: #1720516) -- Graham Inggs Thu, 12 Oct 2017 08:46:21 + ** Changed in: r-base (Ubuntu) Status: Fix Committed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
r-bioc-biocgenerics 0.22.1-1 sync'd from Debian ** Package changed: r-bioc-s4vectors (Debian) => r-base (Debian) ** Changed in: r-base (Ubuntu) Status: In Progress => Fix Committed ** Changed in: r-bioc-biocgenerics (Ubuntu) Status: New => Fix Committed -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-bioc-iranges (Debian) Status: Confirmed => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-base (Ubuntu) Status: Invalid => In Progress ** Changed in: r-bioc-biocgenerics (Ubuntu) Status: Invalid => New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
r-bioc-variantannotation 1.22.3-1 sync'd from Debian and autopkgtests passed ** Changed in: r-bioc-variantannotation (Ubuntu) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
This bug was fixed in the package r-bioc-iranges - 2.10.2-1ubuntu2 --- r-bioc-iranges (2.10.2-1ubuntu2) artful; urgency=medium * Fix compatibility with R 3.4.2 (LP: #1720516) * Re-enable all tests -- Graham Inggs Thu, 05 Oct 2017 18:13:47 + ** Changed in: r-bioc-iranges (Ubuntu) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
This bug was fixed in the package r-bioc-s4vectors - 0.14.3-1ubuntu1 --- r-bioc-s4vectors (0.14.3-1ubuntu1) artful; urgency=medium * Fix compatibility with R 3.4.2 (LP: #1720516) -- Graham Inggs Wed, 04 Oct 2017 05:17:54 + ** Changed in: r-bioc-s4vectors (Ubuntu) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-bioc-variantannotation (Ubuntu) Status: Invalid => New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-bioc-iranges (Debian) Status: Unknown => Confirmed -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Package changed: r-base (Debian) => r-bioc-s4vectors (Debian) ** Bug watch added: Debian Bug tracker #877723 https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877723 ** Also affects: r-bioc-iranges (Debian) via https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877723 Importance: Unknown Status: Unknown ** Changed in: r-base (Ubuntu) Status: New => Invalid ** Changed in: r-bioc-biocgenerics (Ubuntu) Status: New => Invalid ** Changed in: r-bioc-variantannotation (Ubuntu) Status: New => Invalid ** Also affects: r-bioc-s4vectors (Ubuntu) Importance: Undecided Status: New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-base (Debian) Status: New => Confirmed -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Changed in: r-base (Debian) Status: Unknown => New -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1720516] Re: Rebuilding r-bioc-biocgenerics with new R changes behaviour
** Description changed: Rebuilding the arch:all package r-bioc-biocgenerics against r-base-dev 3.4.1.20170921-1 or 3.4.2-1 seems to cause the eventual failure of autopkgtests in r-bioc-iranges and r-bioc-variantannotation. + + IRanges RUnit Tests - 91 test functions, 2 errors, 0 failures + ERROR in test_AtomicList_general: Error in match.arg(method) : 'arg' must be of length 1 + ERROR in test_AtomicList_numerical: Error in match.arg(method) : 'arg' must be of length 1 + + VariantAnnotation RUnit Tests - 80 test functions, 1 error, 0 failures + ERROR in test_VRanges_vcf: Error in match.arg(method) : 'arg' must be of length 1 -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1720516 Title: Rebuilding r-bioc-biocgenerics with new R changes behaviour To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/r-base/+bug/1720516/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
