Public bug reported:
Using mpich from Ubuntu's packages, the attached program crashes with
the following output:
$ mpirun -np 2 ./test
MPI_Init returned 0
myid = 0 i = 1
myid = 0 numprocs = 2
myid = 0: Sending to 1 size = 16000
p0_12348: p4_error: interrupt SIGSEGV: 11
p0_12348: (0.031250) net_send: could not write to fd=12, errno = 32
rm_l_1_12357: (0.000000) net_send: could not write to fd=5, errno = 32
MPI_Init returned 0
myid = 1 numprocs = 2
myid = 1: Receiving from 0 size = 16000
I compiled the executable as follows:
mpicc -Wall -c -o test.o -Wall -g3 test.c
mpicc test.o -o test
I have the following packages installed:
ii libmpich-mpd1.0-dev 1.2.7-8
mpich static libraries and development files
ii libmpich-mpd1.0gf 1.2.7-8
mpich-mpd runtime shared library
ii libmpich1.0-dev 1.2.7-8
mpich static libraries and development files
ii libmpich1.0gf 1.2.7-8
mpich runtime shared library
ii mpich-bin 1.2.7-8
MPI parallel computing system implementation
ii mpich-mpd-bin 1.2.7-8
MPI parallel computing system implementation, MPD version
The alternatives are defines as follows:
lrwxrwxrwx 1 root root 32 May 13 12:23 /etc/alternatives/libmpi++.a ->
/usr/lib/mpich/lib/libpmpich++.a
lrwxrwxrwx 1 root root 40 May 13 12:23 /etc/alternatives/libmpi++.so ->
/usr/lib/mpich/lib/shared/libpmpich++.so
lrwxrwxrwx 1 root root 29 May 13 12:23 /etc/alternatives/libmpi.a ->
/usr/lib/mpich/lib/libmpich.a
lrwxrwxrwx 1 root root 37 May 13 12:23 /etc/alternatives/libmpi.so ->
/usr/lib/mpich/lib/shared/libmpich.so
lrwxrwxrwx 1 root root 44 May 14 15:59 /etc/alternatives/libmpiuni.a ->
/usr/lib/petscdir/2.3.3/lib/libO/libmpiuni.a
lrwxrwxrwx 1 root root 22 May 13 12:23 /etc/alternatives/mpi ->
/usr/lib/mpich/include
lrwxrwxrwx 1 root root 20 May 13 12:23 /etc/alternatives/mpiCC ->
/usr/bin/mpiCC.mpich
lrwxrwxrwx 1 root root 36 May 13 12:23 /etc/alternatives/mpiCC.1.gz ->
/usr/share/man/man1/mpiCC.mpich.1.gz
lrwxrwxrwx 1 root root 20 May 13 12:23 /etc/alternatives/mpicc ->
/usr/bin/mpicc.mpich
lrwxrwxrwx 1 root root 36 May 13 12:23 /etc/alternatives/mpicc.1.gz ->
/usr/share/man/man1/mpicc.mpich.1.gz
lrwxrwxrwx 1 root root 27 May 13 12:23 /etc/alternatives/mpichversion ->
/usr/bin/mpichversion.mpich
lrwxrwxrwx 1 root root 43 May 13 12:23 /etc/alternatives/mpichversion.1.gz ->
/usr/share/man/man1/mpichversion.mpich.1.gz
lrwxrwxrwx 1 root root 21 May 13 12:23 /etc/alternatives/mpicxx ->
/usr/bin/mpicxx.mpich
lrwxrwxrwx 1 root root 37 May 13 12:23 /etc/alternatives/mpicxx.1.gz ->
/usr/share/man/man1/mpicxx.mpich.1.gz
lrwxrwxrwx 1 root root 24 May 13 12:05 /etc/alternatives/mpiexec ->
/usr/bin/mpiexec.openmpi
lrwxrwxrwx 1 root root 40 May 13 12:05 /etc/alternatives/mpiexec.1.gz ->
/usr/share/man/man1/mpiexec.openmpi.1.gz
lrwxrwxrwx 1 root root 21 May 13 12:23 /etc/alternatives/mpif77 ->
/usr/bin/mpif77.mpich
lrwxrwxrwx 1 root root 37 May 13 12:23 /etc/alternatives/mpif77.1.gz ->
/usr/share/man/man1/mpif77.mpich.1.gz
lrwxrwxrwx 1 root root 21 May 13 12:23 /etc/alternatives/mpif90 ->
/usr/bin/mpif90.mpich
lrwxrwxrwx 1 root root 37 May 13 12:23 /etc/alternatives/mpif90.1.gz ->
/usr/share/man/man1/mpif90.mpich.1.gz
lrwxrwxrwx 1 root root 21 May 13 12:23 /etc/alternatives/mpiman ->
/usr/bin/mpiman.mpich
lrwxrwxrwx 1 root root 37 May 13 12:23 /etc/alternatives/mpiman.1.gz ->
/usr/share/man/man1/mpiman.mpich.1.gz
lrwxrwxrwx 1 root root 26 May 13 12:23 /etc/alternatives/mpireconfig ->
/usr/bin/mpireconfig.mpich
lrwxrwxrwx 1 root root 42 May 13 12:23 /etc/alternatives/mpireconfig.1.gz ->
/usr/share/man/man1/mpireconfig.mpich.1.gz
lrwxrwxrwx 1 root root 21 May 13 12:23 /etc/alternatives/mpirun ->
/usr/bin/mpirun.mpich
lrwxrwxrwx 1 root root 37 May 13 12:23 /etc/alternatives/mpirun.1.gz ->
/usr/share/man/man1/mpirun.mpich.1.gz
lrwxrwxrwx 1 root root 38 May 14 15:59 /etc/alternatives/mpirun_lam ->
/usr/lib/petscdir/2.3.3/bin/mpirun_lam
lrwxrwxrwx 1 root root 43 May 14 15:59 /etc/alternatives/mpirun_lam.1.gz ->
/usr/lib/petscdir/2.3.3/bin/mpirun_lam.1.gz
If I just reduce the macro "size" by one, the program works:
$ mpirun -np 2 ./test
MPI_Init returned 0
myid = 0 i = 1
myid = 0 numprocs = 2
myid = 0: Sending to 1 size = 15999
MPI_Init returned 0
myid = 1 numprocs = 2
myid = 1: Receiving from 0 size = 15999
Using a self-built version of mpich-1.2.7p1, everything is OK even for larger
numbers of "size", e.g.
$ mpirun -np 2 ./test
MPI_Init returned 0
myid = 0 i = 1
myid = 0 numprocs = 2
myid = 0: Sending to 1 size = 1600000
MPI_Init returned 0
myid = 1 numprocs = 2
myid = 1: Receiving from 0 size = 1600000
** Affects: mpich (Ubuntu)
Importance: Undecided
Status: New
--
Segmentation fault while sending large arrays
https://bugs.launchpad.net/bugs/231062
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