I'm having the same issue and trying to do the same, but I'm
inexperienced with linux. How do you add -fpermissive to CXXFLAGS?
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Title:
Seth,
You can add it right into the 'make' command after configuration:
make CXXFLAGS=-fpermissive
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Title:
ncbi-blast+ version 2.2.25-3 failed
That did it, thank you very much Heidi!
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Title:
ncbi-blast+ version 2.2.25-3 failed to build on i386
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Helpful suggestions from another forum led me to this solution:
Add -fpermissive to your CXXFLAGS
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Title:
ncbi-blast+ version 2.2.25-3 failed to
Julian - thanks for the info, and sorry for the delayed response.
I barely know enough to get around linux, and know nothing about using a patch.
Is this part of the 'make' file command? Or do I add it into the Makefile
somewhere?
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this might work:
make LDFLAGS=-Wl,--no-as-needed
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Title:
ncbi-blast+ version 2.2.25-3 failed to build on i386
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Thanks so much for the fast response, but unfortunately I am still
getting the same error message. Combing back through the output, I
noticed another error further up:
In file included from
I am having this error while trying to install the rmblast package
2.2.23 in ubuntu (modified version of NCBI Blast to use with
RepeatMasker: http://www.repeatmasker.org/RMBlast.html).
Is there a fix for this? Here is the error I get after executing 'make':
make[8]: Leaving directory
have you tried applying a similar patch to the one used to fix this bug?
(=setting LDFLAGS=-Wl,--no-as-needed)
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Title:
ncbi-blast+ version
** Changed in: ncbi-blast+ (Debian)
Status: New = Fix Released
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Title:
ncbi-blast+ version 2.2.25-3 failed to build on i386
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** Changed in: ncbi-blast+ (Debian)
Status: Unknown = New
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Title:
ncbi-blast+ version 2.2.25-3 failed to build on i386
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This bug was fixed in the package ncbi-blast+ - 2.2.25-3ubuntu1
---
ncbi-blast+ (2.2.25-3ubuntu1) oneiric; urgency=low
* debian/rules: disable --as-needed build (LP: #803185)
almost all private libs are underlinked, fixing them is not worth the
effort
-- Julian Taylor
** Branch linked: lp:~jtaylor/ubuntu/oneiric/ncbi-blast+/fix-803185
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Title:
ncbi-blast+ version 2.2.25-3 failed to build on i386
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most of the private libs of this package are underlinked:
$ ldd -r /usr/lib/ncbi-blast+/*so 21 | grep -c undefined
8291
fixing this package seems like a lot of work and looking at the dependencies it
does not seem like one gains much.
I recommend building this one without --as-needed
** Bug
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