Public bug reported:
Please sync ncbi-blast+ 2.2.25-6 (universe) from Debian unstable (main)
Explanation of the Ubuntu delta and why it can be dropped:
* debian/rules: disable --as-needed build (LP: #803185)
almost all private libs are underlinked, fixing them is not worth the
effort
this issue has been fixed in the debian package and it now builds
Changelog entries since current precise version 2.2.25-3ubuntu1:
ncbi-blast+ (2.2.25-6) unstable; urgency=low
* debian/control:
Luca Capello <l...@pca.it>, fix reference for legacy_blast (Closes:
#642986).
+ add a new line to separate the actual description from usage
instruction in the long Description:.
* debian/rules: add gene_info_reader binary in package
-- Olivier Sallou <olivier.sal...@irisa.fr> Fri, 30 Sep 2011 12:31:05
-0400
ncbi-blast+ (2.2.25-5) unstable; urgency=low
* Team upload.
* debian/patches/hurd_fixes: further patch configure(.ac) to reflect
-Wl,rpath,... support. (Closes: #629656.)
* debian/patches/fix_lib_deps: link makembindex and srsearch against
libxconnect rather than libconnect for consistency with libblast,
which uses the former for consistency with other projects.
-- Aaron M. Ucko <u...@debian.org> Mon, 29 Aug 2011 12:31:05 -0400
ncbi-blast+ (2.2.25-4) unstable; urgency=low
[ Aaron M. Ucko ]
* Team upload.
* debian/patches/support_other_cpus: belatedly add a descriptive header.
* debian/patches/hurd_fixes: new; fix hurd-specific issues.
(In conjunction with the following change, finally closes: #629656.)
* debian/control:
- Build-Depends += libc0.3-dev (>= 2.13-9~) [hurd-i386] to avoid #630180.
- Declare both binary packages as Multi-Arch: foreign.
* debian/patches/fix_lib_deps: new; ensure that all libraries link against
all direct dependencies. (Break the dependency loop between libxblast
and libxalgoblastdbindex by having the former provide only the C++ BLAST
API, leaving the C core only in libblast.) (Closes: #633567.)
* debian/rules: tweak LDFLAGS, supplying -Wl,--as-needed across the
board (as it is now safe to do so) and adding -Wl,--enable-new-dtags
to allow LD_LIBRARY_PATH to override the private rpath.
* debian/patches/no_multiarch_rpath: new; avoid redundant rpath entries
on multiarch systems (courtesy of overzealous logic to ensure
executables will be able to find libstdc++.)
[ Andreas Tille ]
* Enhances: t-coffee (as stated in tasks file)
-- Aaron M. Ucko <u...@debian.org> Sun, 28 Aug 2011 18:45:19 -0400
** Affects: ncbi-blast+ (Ubuntu)
Importance: Wishlist
Status: New
** Changed in: ncbi-blast+ (Ubuntu)
Importance: Undecided => Wishlist
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https://bugs.launchpad.net/bugs/876714
Title:
Sync ncbi-blast+ 2.2.25-6 (universe) from Debian unstable (main)
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