[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
It seems this was fixed in disco. pymol (2.2.0+dfsg-3) unstable; urgency=medium * Team Upload. * Upload Qt5 GUI to unstable for wider testing. * Merge changes from previous NMU 2.2.0+dfsg-1.1. * Update Standards-Version to 4.3.0 (no changes required). * Remove unneeded Suggests: python3-tk from pymol-data. * Fix up autopkgtest tests for Qt5 GUI. -- Stuart Prescott Mon, 31 Dec 2018 17:22:59 +1100 ** Changed in: pymol (Ubuntu) Status: New => Fix Released -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
Ubuntu's pymol has no changes compared to Debian. Therefore, it would be useful if you could report this bug to the Debian maintainers of pymol. https://wiki.ubuntu.com/Debian/Bugs -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
Just to be clear, the changes required to the existing packaging are... --- pymol-1.8.4.0+dfsg/debian/control 2016-10-20 11:33:21.0 -0400 +++ pymol-2.1.0+dfsg/debian/control 2018-04-14 13:57:37.0 -0400 @@ -24,6 +24,8 @@ Package: pymol Architecture: any Depends: python-numpy, + python-pyqt5, + python-pyqt5.qtopengl, python-pmw, python-tk, ${misc:Depends}, --- pymol-1.8.4.0+dfsg/debian/patches/series2016-10-20 11:33:21.0 -0400 +++ pymol-2.1.0+dfsg/debian/patches/series 2018-04-14 14:04:52.0 -0400 @@ -4,8 +4,8 @@ #24_autodock_plugin.patch 27_fix_pymol_path_in_setup.patch 28_no_data_install_in_python_path.patch -29_fix_path_to_splash.patch 31_fix_format-security.patch 32_fix_spelling_lintian_warnings.patch 33_fix_relative_paths_in_example_scripts.patch 34_fix_examples_add_fetch_instead_of_load.patch +40_fix_apbstools_search_path.patch -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
The attachment "02_test-suite.patch" seems to be a patch. If it isn't, please remove the "patch" flag from the attachment, remove the "patch" tag, and if you are a member of the ~ubuntu-reviewers, unsubscribe the team. [This is an automated message performed by a Launchpad user owned by ~brian-murray, for any issues please contact him.] ** Tags added: patch -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
Add additional 40_fix_apbstools_search_path.patch should be added to solve the long standing issue of the apbstools plugin not being able to find the required psize.py and pdb2pqr.py files from the pdb2pqr package in ubuntu. Trivial to fix. ** Patch added: "40_fix_apbstools_search_path.patch" https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+attachment/5115693/+files/40_fix_apbstools_search_path.patch -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
The 33_fix_relative_paths_in_example_scripts.patch has to be regenerated to cope with context changes in the pymol 2.1.0 sources. ** Patch added: "33_fix_relative_paths_in_example_scripts.patch" https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+attachment/5115692/+files/33_fix_relative_paths_in_example_scripts.patch -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
The 22_fix_pymol_import.patch has to be regenerated to cope with context changes in the pymol 2.1.0 sources. ** Patch added: "22_fix_pymol_import.patch" https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+attachment/5115691/+files/22_fix_pymol_import.patch -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
The 02_test-suite.patch has to be regenerated to cope with context changes in the pymol 2.1.0 sources. ** Patch added: "02_test-suite.patch" https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+attachment/5115690/+files/02_test-suite.patch -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs
[Bug 1763992] Re: pymol should be updated to 2.1.0 to use PyQt interface
The PyQt GUI for pymol appears as shown in the attached screen shot under 18.04. ** Attachment added: "Screenshot from 2018-04-14 15-09-08.png" https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+attachment/5115694/+files/Screenshot%20from%202018-04-14%2015-09-08.png -- You received this bug notification because you are a member of Ubuntu Bugs, which is subscribed to Ubuntu. https://bugs.launchpad.net/bugs/1763992 Title: pymol should be updated to 2.1.0 to use PyQt interface To manage notifications about this bug go to: https://bugs.launchpad.net/ubuntu/+source/pymol/+bug/1763992/+subscriptions -- ubuntu-bugs mailing list ubuntu-bugs@lists.ubuntu.com https://lists.ubuntu.com/mailman/listinfo/ubuntu-bugs