re-installed lvm2 with purge option as per below URL:
https://www.devmanuals.net/install/ubuntu/ubuntu-16-10-yakkety-yak/installing-lvm2-on-ubuntu16-10.html
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seems the issue is gone after reinstalling lvm2, now I don't see any
errors anymore
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https://bugs.launchpad.net/bugs/1776225
Title:
package lvm2 2.02.176-4.1ubuntu3 failed to