Re: [Neo4j] neoviz + kernel error

2010-11-09 Thread Johan Svensson
Hi, If it is a very old store that has been running on pre 1.0 beta releases download Neo4j 1.0 and perform a startup+shutdown. After that you will be able to run 1.1 or the current milestone/snapshot releases. If you have been running in HA mode and switched back to for example the 1.1 release

[Neo4j] many small graphs in 1 Database

2010-11-09 Thread Thomas Strunz
Hi all, I have following questions: is neo4j also suited for a database, that contains many 100k of small graphs (5-30 nodes, mostly around 1-4 relationships per node)? (As far as I understood not the main purpose of the product but doesn't hurt to ask) If yes how can you perform subgraph

Re: [Neo4j] Neo4j.py 0.2

2010-11-09 Thread Francois Kassis
Thx, I will be waiting for it. Francois. -- From: Mattias Persson matt...@neotechnology.com Sent: Tuesday, November 09, 2010 2:55 PM To: Neo4j user discussions user@lists.neo4j.org Subject: Re: [Neo4j] Neo4j.py 0.2 2010/11/9 Mattias Persson

Re: [Neo4j] Neo4j.py 0.2

2010-11-09 Thread Mattias Persson
2010/11/9 Mattias Persson matt...@neotechnology.com I lack some knowledge about the python bindings, but I know that they haven't received proper love lately so there is no (that I'm aware of) up2date binding for latest neo4j version. I don't know if fulltext indexing is supported (we're

Re: [Neo4j] Neo4j.py 0.2

2010-11-09 Thread Mattias Persson
I lack some knowledge about the python bindings, but I know that they haven't received proper love lately so there is no (that I'm aware of) up2date binding for latest neo4j version. I don't know if fulltext indexing is supported (we're talking about the old

Re: [Neo4j] many small graphs in 1 Database

2010-11-09 Thread Peter Neubauer
Thomas, IMHO, the examination of the graphs should be much helped by the new Index API, where you can ask and store composite indexes. I would imagine that you could do a lot of the exclusion work by indexing the chemical structures by not only one node, but possibly construct a typical path of

Re: [Neo4j] Accessing neo4j index created with indexservice

2010-11-09 Thread Peter Neubauer
Vasco, sorry for not getting back to you. Is this still relevant, do you want me to look into this? Cheers, /peter neubauer GTalk:      neubauer.peter Skype       peter.neubauer Phone       +46 704 106975 LinkedIn   http://www.linkedin.com/in/neubauer Twitter     

Re: [Neo4j] many small graphs in 1 Database

2010-11-09 Thread Craig Taverner
It's been 13 years since I left Chemistry, but I think I have some residual interest in the subject :-) My two cents worth for this problem is that it is possible to model everything in one single graph: - Store both the chemical structures and the relationships as graphs, differentiating

Re: [Neo4j] neo4j.py issue reading index

2010-11-09 Thread Chris Diehl
Hi Peter, Just wanted to check in with you to see if you all had a chance to look at that index reading issue with neo4j.py. We're hoping it's a quick fix as we would like to use neo4j.py in some experiments we're doing now. Thanks again for looking into this. Cheers, Chris Message: 1 Date:

[Neo4j] JTA support for Neo

2010-11-09 Thread Chris Gioran
Hi people, I have started work on providing support for integrating Neo in a JTA environment. This is the first time I have done something like this so some feedback would be welcome. My setup is this: I have an ApacheDS instance running to provide an LDAP service to store objects. I have

Re: [Neo4j] neo4j.py issue reading index

2010-11-09 Thread Peter Neubauer
Also, I updated the info on http://components.neo4j.org/neo4j.py/ to reflect this. Sorry for the inconvenience! Cheers, /peter neubauer GTalk:      neubauer.peter Skype       peter.neubauer Phone       +46 704 106975 LinkedIn   http://www.linkedin.com/in/neubauer Twitter     

Re: [Neo4j] JTA support for Neo

2010-11-09 Thread Peter Neubauer
Chris, Awesome! I think the next step would be to start testing things when neo4j needs to recover, rollback etc, I think this is where the problems arise :) Also, any chance of making a maven project out of it and having the project as a test component somewhere in the Svn repo, so it can be run

Re: [Neo4j] JTA support for Neo

2010-11-09 Thread Chris Gioran
Chris, Awesome! I think the next step would be to start testing things when neo4j needs to recover, rollback etc, I think this is where the problems arise :) Also, any chance of making a maven project out of it and having the project as a test component somewhere in the Svn repo, so it can

Re: [Neo4j] Eigenvector Centrality subclasses

2010-11-09 Thread Paul A. Jackson
Not sure if this fell through the cracks. Here are some more specific questions. I get inconsistent results from run to run using eigenvector centrality. It doesn't seem to matter which implementation I use but I have used Arnoldi most, for no reason other than it returns the iteration count.

Re: [Neo4j] Eigenvector Centrality subclasses

2010-11-09 Thread Marko Rodriguez
Hey Paul, I get inconsistent results from run to run using eigenvector centrality. It doesn't seem to matter which implementation I use but I have used Arnoldi most, for no reason other than it returns the iteration count. Given that eigenvector components sum to 1, and when dealing with

Re: [Neo4j] Eigenvector Centrality subclasses

2010-11-09 Thread Paul A. Jackson
I'm using: import org.neo4j.graphalgo.impl.centrality.EigenvectorCentrality; import org.neo4j.graphalgo.impl.centrality.EigenvectorCentralityArnoldi; import org.neo4j.graphalgo.impl.centrality.EigenvectorCentralityPower; The variance I am seeing is far greater than anything that could be

Re: [Neo4j] Question about setConfiguration()

2010-11-09 Thread Andres Taylor
It most often is. But he is so nice that we keep him around anyway... :) Andrés On Tue, Nov 9, 2010 at 11:09 PM, Marko Rodriguez okramma...@gmail.comwrote: Hi, However, I seem to be running into a bug where IndexHits.size() 0, but I'm not getting back what I indexed :( ... I will try