Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Saisai Shao
So I think ramdisk is simple way to try. Besides I think Reynold's suggestion is quite valid, with such high-end machine, putting everything in memory might not improve the performance a lot as assumed. Since bottleneck will be shifted, like memory bandwidth, NUMA, CPU efficiency (serialization-de

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
Yes we see it on final write. Our preference is to eliminate this. On Fri, Apr 1, 2016, 7:25 PM Saisai Shao wrote: > Hi Michael, shuffle data (mapper output) have to be materialized into disk > finally, no matter how large memory you have, it is the design purpose of > Spark. In you scenario, s

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Saisai Shao
Hi Michael, shuffle data (mapper output) have to be materialized into disk finally, no matter how large memory you have, it is the design purpose of Spark. In you scenario, since you have a big memory, shuffle spill should not happen frequently, most of the disk IO you see might be final shuffle fi

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
As I mentioned earlier this flag is now ignored. On Fri, Apr 1, 2016, 6:39 PM Michael Slavitch wrote: > Shuffling a 1tb set of keys and values (aka sort by key) results in about > 500gb of io to disk if compression is enabled. Is there any way to > eliminate shuffling causing io? > > On Fri, Ap

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
Shuffling a 1tb set of keys and values (aka sort by key) results in about 500gb of io to disk if compression is enabled. Is there any way to eliminate shuffling causing io? On Fri, Apr 1, 2016, 6:32 PM Reynold Xin wrote: > Michael - I'm not sure if you actually read my email, but spill has > no

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Reynold Xin
hat configuration is > available. > > Thanks > > Yong > > -- > From: r...@databricks.com > Date: Fri, 1 Apr 2016 15:32:23 -0700 > Subject: Re: Eliminating shuffle write and spill disk IO reads/writes in > Spark > To: slavi...@gmail.com

RE: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Yong Zhang
3 -0700 Subject: Re: Eliminating shuffle write and spill disk IO reads/writes in Spark To: slavi...@gmail.com CC: mri...@gmail.com; d...@spark.apache.org; user@spark.apache.org Michael - I'm not sure if you actually read my email, but spill has nothing to do with the shuffle files on

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Reynold Xin
Michael - I'm not sure if you actually read my email, but spill has nothing to do with the shuffle files on disk. It was for the partitioning (i.e. sorting) process. If that flag is off, Spark will just run out of memory when data doesn't fit in memory. On Fri, Apr 1, 2016 at 3:28 PM, Michael Sla

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
RAMdisk is a fine interim step but there is a lot of layers eliminated by keeping things in memory unless there is need for spillover. At one time there was support for turning off spilling. That was eliminated. Why? On Fri, Apr 1, 2016, 6:05 PM Mridul Muralidharan wrote: > I think Reynold's

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Mridul Muralidharan
I think Reynold's suggestion of using ram disk would be a good way to test if these are the bottlenecks or something else is. For most practical purposes, pointing local dir to ramdisk should effectively give you 'similar' performance as shuffling from memory. Are there concerns with taking that a

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
I totally disagree that it’s not a problem. - Network fetch throughput on 40G Ethernet exceeds the throughput of NVME drives. - What Spark is depending on is Linux’s IO cache as an effective buffer pool This is fine for small jobs but not for jobs with datasets in the TB/node range. - On larger

Re: Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Reynold Xin
spark.shuffle.spill actually has nothing to do with whether we write shuffle files to disk. Currently it is not possible to not write shuffle files to disk, and typically it is not a problem because the network fetch throughput is lower than what disks can sustain. In most cases, especially with SS

Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
Hello; I’m working on spark with very large memory systems (2TB+) and notice that Spark spills to disk in shuffle. Is there a way to force spark to stay in memory when doing shuffle operations? The goal is to keep the shuffle data either in the heap or in off-heap memory (in 1.6.x) and never

Eliminating shuffle write and spill disk IO reads/writes in Spark

2016-04-01 Thread Michael Slavitch
Hello; I’m working on spark with very large memory systems (2TB+) and notice that Spark spills to disk in shuffle. Is there a way to force spark to stay in memory when doing shuffle operations? The goal is to keep the shuffle data either in the heap or in off-heap memory (in 1.6.x) and never