Announcing Spark 1.4.1!

2015-07-15 Thread Patrick Wendell
Hi All, I'm happy to announce the Spark 1.4.1 maintenance release. We recommend all users on the 1.4 branch upgrade to this release, which contain several important bug fixes. Download Spark 1.4.1 - http://spark.apache.org/downloads.html Release notes -

SparkHub: a new community site for Apache Spark

2015-07-10 Thread Patrick Wendell
Hi All, Today, I'm happy to announce SparkHub (http://sparkhub.databricks.com), a service for the Apache Spark community to easily find the most relevant Spark resources on the web. SparkHub is a curated list of Spark news, videos and talks, package releases, upcoming events around the world,

Re: Fully in-memory shuffles

2015-06-11 Thread Patrick Wendell
...@gmail.com wrote: Ok so it is the case that small shuffles can be done without hitting any disk. Is this the same case for the aux shuffle service in yarn? Can that be done without hitting disk? On Wed, Jun 10, 2015 at 9:17 PM, Patrick Wendell pwend...@gmail.com wrote: In many cases the shuffle

[ANNOUNCE] Announcing Spark 1.4

2015-06-11 Thread Patrick Wendell
Hi All, I'm happy to announce the availability of Spark 1.4.0! Spark 1.4.0 is the fifth release on the API-compatible 1.X line. It is Spark's largest release ever, with contributions from 210 developers and more than 1,000 commits! A huge thanks go to all of the individuals and organizations

Re: Fully in-memory shuffles

2015-06-10 Thread Patrick Wendell
In many cases the shuffle will actually hit the OS buffer cache and not ever touch spinning disk if it is a size that is less than memory on the machine. - Patrick On Wed, Jun 10, 2015 at 5:06 PM, Corey Nolet cjno...@gmail.com wrote: So with this... to help my understanding of Spark under the

Re: Spark timeout issue

2015-04-26 Thread Patrick Wendell
Hi Deepak - please direct this to the user@ list. This list is for development of Spark itself. On Sun, Apr 26, 2015 at 12:42 PM, Deepak Gopalakrishnan dgk...@gmail.com wrote: Hello All, I'm trying to process a 3.5GB file on standalone mode using spark. I could run my spark job succesfully on

Announcing Spark 1.3.1 and 1.2.2

2015-04-17 Thread Patrick Wendell
Hi All, I'm happy to announce the Spark 1.3.1 and 1.2.2 maintenance releases. We recommend all users on the 1.3 and 1.2 Spark branches upgrade to these releases, which contain several important bug fixes. Download Spark 1.3.1 or 1.2.2: http://spark.apache.org/downloads.html Release notes:

Re: Configuring amount of disk space available to spark executors in mesos?

2015-04-13 Thread Patrick Wendell
Hey Jonathan, Are you referring to disk space used for storing persisted RDD's? For that, Spark does not bound the amount of data persisted to disk. It's a similar story to how Spark's shuffle disk output works (and also Hadoop and other frameworks make this assumption as well for their shuffle

Re: RDD resiliency -- does it keep state?

2015-03-27 Thread Patrick Wendell
If you invoke this, you will get at-least-once semantics on failure. For instance, if a machine dies in the middle of executing the foreach for a single partition, that will be re-executed on another machine. It could even fully complete on one machine, but the machine dies immediately before

Re: Spark 1.3 Source - Github and source tar does not seem to match

2015-03-27 Thread Patrick Wendell
The source code should match the Spark commit 4aaf48d46d13129f0f9bdafd771dd80fe568a7dc. Do you see any differences? On Fri, Mar 27, 2015 at 11:28 AM, Manoj Samel manojsamelt...@gmail.com wrote: While looking into a issue, I noticed that the source displayed on Github site does not matches the

Re: RDD.map does not allowed to preservesPartitioning?

2015-03-26 Thread Patrick Wendell
I think we have a version of mapPartitions that allows you to tell Spark the partitioning is preserved: https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/rdd/RDD.scala#L639 We could also add a map function that does same. Or you can just write your map using an

Re: 1.3 Hadoop File System problem

2015-03-24 Thread Patrick Wendell
Hey Jim, Thanks for reporting this. Can you give a small end-to-end code example that reproduces it? If so, we can definitely fix it. - Patrick On Tue, Mar 24, 2015 at 4:55 PM, Jim Carroll jimfcarr...@gmail.com wrote: I have code that works under 1.2.1 but when I upgraded to 1.3.0 it fails to

Re: DataFrame operation on parquet: GC overhead limit exceeded

2015-03-23 Thread Patrick Wendell
Hey Yiannis, If you just perform a count on each name, date pair... can it succeed? If so, can you do a count and then order by to find the largest one? I'm wondering if there is a single pathologically large group here that is somehow causing OOM. Also, to be clear, you are getting GC limit

[ANNOUNCE] Announcing Spark 1.3!

2015-03-13 Thread Patrick Wendell
Hi All, I'm happy to announce the availability of Spark 1.3.0! Spark 1.3.0 is the fourth release on the API-compatible 1.X line. It is Spark's largest release ever, with contributions from 172 developers and more than 1,000 commits! Visit the release notes [1] to read about the new features, or

Re: How to set per-user spark.local.dir?

2015-03-11 Thread Patrick Wendell
We don't support expressions or wildcards in that configuration. For each application, the local directories need to be constant. If you have users submitting different Spark applications, those can each set spark.local.dirs. - Patrick On Wed, Mar 11, 2015 at 12:14 AM, Jianshi Huang

Re: Spark v1.2.1 failing under BigTop build in External Flume Sink (due to missing Netty library)

2015-03-05 Thread Patrick Wendell
You may need to add the -Phadoop-2.4 profile. When building or release packages for Hadoop 2.4 we use the following flags: -Phadoop-2.4 -Phive -Phive-thriftserver -Pyarn - Patrick On Thu, Mar 5, 2015 at 12:47 PM, Kelly, Jonathan jonat...@amazon.com wrote: I confirmed that this has nothing to

Re: Is SPARK_CLASSPATH really deprecated?

2015-02-27 Thread Patrick Wendell
I think we need to just update the docs, it is a bit unclear right now. At the time, we made it worded fairly sternly because we really wanted people to use --jars when we deprecated SPARK_CLASSPATH. But there are other types of deployments where there is a legitimate need to augment the classpath

Re: Add PredictionIO to Powered by Spark

2015-02-24 Thread Patrick Wendell
Added - thanks! I trimmed it down a bit to fit our normal description length. On Mon, Jan 5, 2015 at 8:24 AM, Thomas Stone tho...@prediction.io wrote: Please can we add PredictionIO to https://cwiki.apache.org/confluence/display/SPARK/Powered+By+Spark PredictionIO http://prediction.io/

Re: Can you add Big Industries to the Powered by Spark page?

2015-02-24 Thread Patrick Wendell
I've added it, thanks! On Fri, Feb 20, 2015 at 12:22 AM, Emre Sevinc emre.sev...@gmail.com wrote: Hello, Could you please add Big Industries to the Powered by Spark page at https://cwiki.apache.org/confluence/display/SPARK/Powered+By+Spark ? Company Name: Big Industries URL:

Re: FW: Submitting jobs to Spark EC2 cluster remotely

2015-02-23 Thread Patrick Wendell
is exactly the issue: on my master node UI at the bottom I can see the list of Completed Drivers all with ERROR state... Thanks, Oleg -Original Message- From: Patrick Wendell [mailto:pwend...@gmail.com] Sent: Monday, February 23, 2015 12:59 AM To: Oleg Shirokikh Cc: user

Re: Re: Sort Shuffle performance issues about using AppendOnlyMap for large data sets

2015-02-12 Thread Patrick Wendell
The map will start with a capacity of 64, but will grow to accommodate new data. Are you using the groupBy operator in Spark or are you using Spark SQL's group by? This usually happens if you are grouping or aggregating in a way that doesn't sufficiently condense the data created from each input

Re: feeding DataFrames into predictive algorithms

2015-02-11 Thread Patrick Wendell
I think there is a minor error here in that the first example needs a tail after the seq: df.map { row = (row.getDouble(0), row.toSeq.tail.map(_.asInstanceOf[Double])) }.toDataFrame(label, features) On Wed, Feb 11, 2015 at 7:46 PM, Michael Armbrust mich...@databricks.com wrote: It sounds like

Re: Questions about Spark standalone resource scheduler

2015-02-02 Thread Patrick Wendell
Hey Jerry, I think standalone mode will still add more features over time, but the goal isn't really for it to become equivalent to what Mesos/YARN are today. Or at least, I doubt Spark Standalone will ever attempt to manage _other_ frameworks outside of Spark and become a general purpose

Re: Bouncing Mails

2015-01-17 Thread Patrick Wendell
Akhil, Those are handled by ASF infrastructure, not anyone in the Spark project. So this list is not the appropriate place to ask for help. - Patrick On Sat, Jan 17, 2015 at 12:56 AM, Akhil Das ak...@sigmoidanalytics.com wrote: My mails to the mailing list are getting rejected, have opened a

Re: Accumulator value in Spark UI

2015-01-14 Thread Patrick Wendell
It should appear in the page for any stage in which accumulators are updated. On Wed, Jan 14, 2015 at 6:46 PM, Justin Yip yipjus...@prediction.io wrote: Hello, From accumulator documentation, it says that if the accumulator is named, it will be displayed in the WebUI. However, I cannot find

Re: Long-running job cleanup

2014-12-28 Thread Patrick Wendell
What do you mean when you say the overhead of spark shuffles start to accumulate? Could you elaborate more? In newer versions of Spark shuffle data is cleaned up automatically when an RDD goes out of scope. It is safe to remove shuffle data at this point because the RDD can no longer be

Re: action progress in ipython notebook?

2014-12-28 Thread Patrick Wendell
Hey Eric, I'm just curious - which specific features in 1.2 do you find most help with usability? This is a theme we're focusing on for 1.3 as well, so it's helpful to hear what makes a difference. - Patrick On Sun, Dec 28, 2014 at 1:36 AM, Eric Friedman eric.d.fried...@gmail.com wrote: Hi

Re: Question on saveAsTextFile with overwrite option

2014-12-24 Thread Patrick Wendell
Is it sufficient to set spark.hadoop.validateOutputSpecs to false? http://spark.apache.org/docs/latest/configuration.html - Patrick On Wed, Dec 24, 2014 at 10:52 PM, Shao, Saisai saisai.s...@intel.com wrote: Hi, We have such requirements to save RDD output to HDFS with saveAsTextFile like

Re: Question on saveAsTextFile with overwrite option

2014-12-24 Thread Patrick Wendell
: Patrick Wendell [mailto:pwend...@gmail.com] Sent: Thursday, December 25, 2014 3:22 PM To: Shao, Saisai Cc: user@spark.apache.org; d...@spark.apache.org Subject: Re: Question on saveAsTextFile with overwrite option Is it sufficient to set spark.hadoop.validateOutputSpecs to false? http

Announcing Spark 1.2!

2014-12-19 Thread Patrick Wendell
I'm happy to announce the availability of Spark 1.2.0! Spark 1.2.0 is the third release on the API-compatible 1.X line. It is Spark's largest release ever, with contributions from 172 developers and more than 1,000 commits! This release brings operational and performance improvements in Spark

Re: spark streaming kafa best practices ?

2014-12-17 Thread Patrick Wendell
, 2014 at 12:57 AM, Patrick Wendell pwend...@gmail.com wrote: The second choice is better. Once you call collect() you are pulling all of the data onto a single node, you want to do most of the processing in parallel on the cluster, which is what map() will do. Ideally you'd try to summarize

Re: Spark Server - How to implement

2014-12-12 Thread Patrick Wendell
Hey Manoj, One proposal potentially of interest is the Spark Kernel project from IBM - you should look for their. The interface in that project is more of a remote REPL interface, i.e. you submit commands (as strings) and get back results (as strings), but you don't have direct programmatic

Re: Stateful mapPartitions

2014-12-05 Thread Patrick Wendell
Yeah the main way to do this would be to have your own static cache of connections. These could be using an object in Scala or just a static variable in Java (for instance a set of connections that you can borrow from). - Patrick On Thu, Dec 4, 2014 at 5:26 PM, Tobias Pfeiffer t...@preferred.jp

Re: Exception adding resource files in latest Spark

2014-12-04 Thread Patrick Wendell
Thanks for flagging this. I reverted the relevant YARN fix in Spark 1.2 release. We can try to debug this in master. On Thu, Dec 4, 2014 at 9:51 PM, Jianshi Huang jianshi.hu...@gmail.com wrote: I created a ticket for this: https://issues.apache.org/jira/browse/SPARK-4757 Jianshi On Fri,

Re: latest Spark 1.2 thrift server fail with NoClassDefFoundError on Guava

2014-11-30 Thread Patrick Wendell
to bypass the error. This was caused by a local change, so no impact on the 1.2 release. -Original Message- From: Patrick Wendell [mailto:pwend...@gmail.com] Sent: Wednesday, November 26, 2014 8:17 AM To: Judy Nash Cc: Denny Lee; Cheng Lian; u...@spark.incubator.apache.org Subject: Re

Re: Opening Spark on IntelliJ IDEA

2014-11-29 Thread Patrick Wendell
I recently posted instructions on loading Spark in Intellij from scratch: https://cwiki.apache.org/confluence/display/SPARK/Useful+Developer+Tools#UsefulDeveloperTools-BuildingSparkinIntelliJIDEA You need to do a few extra steps for the YARN project to work. Also, for questions like this that

Re: latest Spark 1.2 thrift server fail with NoClassDefFoundError on Guava

2014-11-26 Thread Patrick Wendell
Hi Judy, Are you somehow modifying Spark's classpath to include jars from Hadoop and Hive that you have running on the machine? The issue seems to be that you are somehow including a version of Hadoop that references the original guava package. The Hadoop that is bundled in the Spark jars should

Re: latest Spark 1.2 thrift server fail with NoClassDefFoundError on Guava

2014-11-26 Thread Patrick Wendell
/Preconitions.checkArgument:(ZLjava/lang/Object;)V 50: invokestatic #502// Method org/spark-project/guava/common/base/Preconitions.checkArgument:(ZLjava/lang/Object;)V On Wed, Nov 26, 2014 at 11:08 AM, Patrick Wendell pwend...@gmail.com wrote: Hi Judy, Are you somehow

Re: toLocalIterator in Spark 1.0.0

2014-11-13 Thread Patrick Wendell
It looks like you are trying to directly import the toLocalIterator function. You can't import functions, it should just appear as a method of an existing RDD if you have one. - Patrick On Thu, Nov 13, 2014 at 10:21 PM, Deep Pradhan pradhandeep1...@gmail.com wrote: Hi, I am using Spark 1.0.0

Re: Still struggling with building documentation

2014-11-11 Thread Patrick Wendell
The doc build appears to be broken in master. We'll get it patched up before the release: https://issues.apache.org/jira/browse/SPARK-4326 On Tue, Nov 11, 2014 at 10:50 AM, Alessandro Baretta alexbare...@gmail.com wrote: Nichols and Patrick, Thanks for your help, but, no, it still does not

Re: Spark and Play

2014-11-11 Thread Patrick Wendell
Hi There, Because Akka versions are not binary compatible with one another, it might not be possible to integrate Play with Spark 1.1.0. - Patrick On Tue, Nov 11, 2014 at 8:21 AM, Akshat Aranya aara...@gmail.com wrote: Hi, Sorry if this has been asked before; I didn't find a satisfactory

Re: Support Hive 0.13 .1 in Spark SQL

2014-10-28 Thread Patrick Wendell
Hey Cheng, Right now we aren't using stable API's to communicate with the Hive Metastore. We didn't want to drop support for Hive 0.12 so right now we are using a shim layer to support compiling for 0.12 and 0.13. This is very costly to maintain. If Hive has a stable meta-data API for talking to

Re: Ending a job early

2014-10-28 Thread Patrick Wendell
Hey Jim, There are some experimental (unstable) API's that support running jobs which might short-circuit: https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/SparkContext.scala#L1126 This can be used for doing online aggregations like you are describing. And in one

Re: scalac crash when compiling DataTypeConversions.scala

2014-10-23 Thread Patrick Wendell
Hey Ryan, I've found that filing issues with the Scala/Typesafe JIRA is pretty helpful if the issue can be fully reproduced, and even sometimes helpful if it can't. You can file bugs here: https://issues.scala-lang.org/secure/Dashboard.jspa The Spark SQL code in particular is typically the

Re: About Memory usage in the Spark UI

2014-10-23 Thread Patrick Wendell
It shows the amount of memory used to store RDD blocks, which are created when you run .cache()/.persist() on an RDD. On Wed, Oct 22, 2014 at 10:07 PM, Haopu Wang hw...@qilinsoft.com wrote: Hi, please take a look at the attached screen-shot. I wonders what's the Memory Used column mean. I

Re: coalesce with shuffle or repartition is not necessarily fault-tolerant

2014-10-08 Thread Patrick Wendell
IIRC - the random is seeded with the index, so it will always produce the same result for the same index. Maybe I don't totally follow though. Could you give a small example of how this might change the RDD ordering in a way that you don't expect? In general repartition() will not preserve the

Re: sparksql connect remote hive cluster

2014-10-08 Thread Patrick Wendell
Spark will need to connect both to the hive metastore and to all HDFS nodes (NN and DN's). If that is all in place then it should work. In this case it looks like maybe it can't connect to a datanode in HDFS to get the raw data. Keep in mind that the performance might not be very good if you are

Re: Spot instances on Amazon EMR

2014-09-18 Thread Patrick Wendell
Hey Grzegorz, EMR is a service that is not maintained by the Spark community. So this list isn't the right place to ask EMR questions. - Patrick On Thu, Sep 18, 2014 at 3:19 AM, Grzegorz Białek grzegorz.bia...@codilime.com wrote: Hi, I would like to run Spark application on Amazon EMR. I have

Re: partitioned groupBy

2014-09-17 Thread Patrick Wendell
guess I would need to override mapPartitions() directly within my RDD. Right? On Tue, Sep 16, 2014 at 4:57 PM, Patrick Wendell pwend...@gmail.com wrote: If each partition can fit in memory, you can do this using mapPartitions and then building an inverse mapping within each partition. You'd need

Re: partitioned groupBy

2014-09-16 Thread Patrick Wendell
If each partition can fit in memory, you can do this using mapPartitions and then building an inverse mapping within each partition. You'd need to construct a hash map within each partition yourself. On Tue, Sep 16, 2014 at 4:27 PM, Akshat Aranya aara...@gmail.com wrote: I have a use case where

Re: spark-1.1.0 with make-distribution.sh problem

2014-09-14 Thread Patrick Wendell
Yeah that issue has been fixed by adding better docs, it just didn't make it in time for the release: https://github.com/apache/spark/blob/branch-1.1/make-distribution.sh#L54 On Thu, Sep 11, 2014 at 11:57 PM, Zhanfeng Huo huozhanf...@gmail.com wrote: resolved: ./make-distribution.sh --name

Re: Use Case of mutable RDD - any ideas around will help.

2014-09-12 Thread Patrick Wendell
[moving to user@] This would typically be accomplished with a union() operation. You can't mutate an RDD in-place, but you can create a new RDD with a union() which is an inexpensive operator. On Fri, Sep 12, 2014 at 5:28 AM, Archit Thakur archit279tha...@gmail.com wrote: Hi, We have a use

Re: Spark 1.1.0: Cannot load main class from JAR

2014-09-12 Thread Patrick Wendell
Hey SK, Yeah, the documented format is the same (we expect users to add the jar at the end) but the old spark-submit had a bug where it would actually accept inputs that did not match the documented format. Sorry if this was difficult to find! - Patrick On Fri, Sep 12, 2014 at 1:50 PM, SK

Announcing Spark 1.1.0!

2014-09-11 Thread Patrick Wendell
I am happy to announce the availability of Spark 1.1.0! Spark 1.1.0 is the second release on the API-compatible 1.X line. It is Spark's largest release ever, with contributions from 171 developers! This release brings operational and performance improvements in Spark core including a new

Re: Deployment model popularity - Standard vs. YARN vs. Mesos vs. SIMR

2014-09-07 Thread Patrick Wendell
I would say that the first three are all used pretty heavily. Mesos was the first one supported (long ago), the standalone is the simplest and most popular today, and YARN is newer but growing a lot in activity. SIMR is not used as much... it was designed mostly for environments where users had

Re: memory size for caching RDD

2014-09-03 Thread Patrick Wendell
Changing this is not supported, it si immutable similar to other spark configuration settings. On Wed, Sep 3, 2014 at 8:13 PM, 牛兆捷 nzjem...@gmail.com wrote: Dear all: Spark uses memory to cache RDD and the memory size is specified by spark.storage.memoryFraction. One the Executor starts,

Re: Spark Streaming: DStream - zipWithIndex

2014-08-27 Thread Patrick Wendell
Yeah - each batch will produce a new RDD. On Wed, Aug 27, 2014 at 3:33 PM, Soumitra Kumar kumar.soumi...@gmail.com wrote: Thanks. Just to double check, rdd.id would be unique for a batch in a DStream? On Wed, Aug 27, 2014 at 3:04 PM, Xiangrui Meng men...@gmail.com wrote: You can use RDD

Submit to the Powered By Spark Page!

2014-08-26 Thread Patrick Wendell
Hi All, I want to invite users to submit to the Spark Powered By page. This page is a great way for people to learn about Spark use cases. Since Spark activity has increased a lot in the higher level libraries and people often ask who uses each one, we'll include information about which

Re: Understanding RDD.GroupBy OutOfMemory Exceptions

2014-08-25 Thread Patrick Wendell
might land in Spark 1.2, is that being tracked in https://issues.apache.org/jira/browse/SPARK-1823 or is there another ticket I should be following? Thanks! Andrew On Tue, Aug 5, 2014 at 3:39 PM, Patrick Wendell pwend...@gmail.com wrote: Hi Jens, Within a partition things will spill

Re: Advantage of using cache()

2014-08-23 Thread Patrick Wendell
Yep - that's correct. As an optimization we save the shuffle output and re-use if if you execute a stage twice. So this can make A:B tests like this a bit confusing. - Patrick On Friday, August 22, 2014, Nieyuan qiushuiwuh...@gmail.com wrote: Because map-reduce tasks like join will save

Re: Advantage of using cache()

2014-08-20 Thread Patrick Wendell
Your rdd2 and rdd3 differ in two ways so it's hard to track the exact effect of caching. In rdd3, in addition to the fact that rdd will be cached, you are also doing a bunch of extra random number generation. So it will be hard to isolate the effect of caching. On Wed, Aug 20, 2014 at 7:48 AM,

Re: Broadcast vs simple variable

2014-08-20 Thread Patrick Wendell
For large objects, it will be more efficient to broadcast it. If your array is small it won't really matter. How many centers do you have? Unless you are finding that you have very large tasks (and Spark will print a warning about this), it could be okay to just reference it directly. On Wed,

Re: Web UI doesn't show some stages

2014-08-20 Thread Patrick Wendell
The reason is that some operators get pipelined into a single stage. rdd.map(XX).filter(YY) - this executes in a single stage since there is no data movement needed in between these operations. If you call toDeubgString on the final RDD it will give you some information about the exact lineage.

Re: Understanding RDD.GroupBy OutOfMemory Exceptions

2014-08-05 Thread Patrick Wendell
out sequentially on disk on one big file, you can call `sortByKey` with a hashed suffix as well. The sort functions are externalized in Spark 1.1 (which is in pre-release). - Patrick On Tue, Aug 5, 2014 at 2:39 PM, Jens Kristian Geyti sp...@jkg.dk wrote: Patrick Wendell wrote In the latest

Re: What should happen if we try to cache more data than the cluster can hold in memory?

2014-08-04 Thread Patrick Wendell
It seems possible that you are running out of memory unrolling a single partition of the RDD. This is something that can cause your executor to OOM, especially if the cache is close to being full so the executor doesn't have much free memory left. How large are your executors? At the time of

Re: What should happen if we try to cache more data than the cluster can hold in memory?

2014-08-04 Thread Patrick Wendell
BTW - the reason why the workaround could help is because when persisting to DISK_ONLY, we explicitly avoid materializing the RDD partition in memory... we just pass it through to disk On Mon, Aug 4, 2014 at 1:10 AM, Patrick Wendell pwend...@gmail.com wrote: It seems possible that you

Re: Issues with HDP 2.4.0.2.1.3.0-563

2014-08-04 Thread Patrick Wendell
For hortonworks, I believe it should work to just link against the corresponding upstream version. I.e. just set the Hadoop version to 2.4.0 Does that work? - Patrick On Mon, Aug 4, 2014 at 12:13 AM, Ron's Yahoo! zlgonza...@yahoo.com.invalid wrote: Hi, Not sure whose issue this is, but if

Re: Cached RDD Block Size - Uneven Distribution

2014-08-04 Thread Patrick Wendell
Are you directly caching files from Hadoop or are you doing some transformation on them first? If you are doing a groupBy or some type of transformation, then you could be causing data skew that way. On Sun, Aug 3, 2014 at 1:19 PM, iramaraju iramar...@gmail.com wrote: I am running spark 1.0.0,

Re: disable log4j for spark-shell

2014-08-03 Thread Patrick Wendell
If you want to customize the logging behavior - the simplest way is to copy conf/log4j.properties.tempate to conf/log4j.properties. Then you can go and modify the log level in there. The spark shells should pick this up. On Sun, Aug 3, 2014 at 6:16 AM, Sean Owen so...@cloudera.com wrote:

Re: Compiling Spark master (284771ef) with sbt/sbt assembly fails on EC2

2014-08-01 Thread Patrick Wendell
This is a Scala bug - I filed something upstream, hopefully they can fix it soon and/or we can provide a work around: https://issues.scala-lang.org/browse/SI-8772 - Patrick On Fri, Aug 1, 2014 at 3:15 PM, Holden Karau hol...@pigscanfly.ca wrote: Currently scala 2.10.2 can't be pulled in from

Re: Compiling Spark master (284771ef) with sbt/sbt assembly fails on EC2

2014-08-01 Thread Patrick Wendell
I've had intermiddent access to the artifacts themselves, but for me the directory listing always 404's. I think if sbt hits a 404 on the directory, it sends a somewhat confusing error message that it can't download the artifact. - Patrick On Fri, Aug 1, 2014 at 3:28 PM, Shivaram Venkataraman

Re: how to publish spark inhouse?

2014-07-28 Thread Patrick Wendell
All of the scripts we use to publish Spark releases are in the Spark repo itself, so you could follow these as a guideline. The publishing process in Maven is similar to in SBT: https://github.com/apache/spark/blob/master/dev/create-release/create-release.sh#L65 On Mon, Jul 28, 2014 at 12:39 PM,

Re: Catalyst dependency on Spark Core

2014-07-14 Thread Patrick Wendell
Adding new build modules is pretty high overhead, so if this is a case where a small amount of duplicated code could get rid of the dependency, that could also be a good short-term option. - Patrick On Mon, Jul 14, 2014 at 2:15 PM, Matei Zaharia matei.zaha...@gmail.com wrote: Yeah, I'd just add

Announcing Spark 1.0.1

2014-07-11 Thread Patrick Wendell
I am happy to announce the availability of Spark 1.0.1! This release includes contributions from 70 developers. Spark 1.0.0 includes fixes across several areas of Spark, including the core API, PySpark, and MLlib. It also includes new features in Spark's (alpha) SQL library, including support for

Re: How to clear the list of Completed Appliations in Spark web UI?

2014-07-09 Thread Patrick Wendell
There isn't currently a way to do this, but it will start dropping older applications once more than 200 are stored. On Wed, Jul 9, 2014 at 4:04 PM, Haopu Wang hw...@qilinsoft.com wrote: Besides restarting the Master, is there any other way to clear the Completed Applications in Master web UI?

Re: Purpose of spark-submit?

2014-07-09 Thread Patrick Wendell
It fulfills a few different functions. The main one is giving users a way to inject Spark as a runtime dependency separately from their program and make sure they get exactly the right version of Spark. So a user can bundle an application and then use spark-submit to send it to different types of

Re: issues with ./bin/spark-shell for standalone mode

2014-07-09 Thread Patrick Wendell
Hey Mikhail, I think (hope?) the -em and -dm options were never in an official Spark release. They were just in the master branch at some point. Did you use these during a previous Spark release or were you just on master? - Patrick On Wed, Jul 9, 2014 at 9:18 AM, Mikhail Strebkov

Re: hadoop + yarn + spark

2014-06-27 Thread Patrick Wendell
Hi There, There is an issue with PySpark-on-YARN that requires users build with Java 6. The issue has to do with how Java 6 and 7 package jar files differently. Can you try building spark with Java 6 and trying again? - Patrick On Fri, Jun 27, 2014 at 5:00 PM, sdeb sangha...@gmail.com wrote:

Re: 1.0.1 release plan

2014-06-20 Thread Patrick Wendell
Hey There, I'd like to start voting on this release shortly because there are a few important fixes that have queued up. We're just waiting to fix an akka issue. I'd guess we'll cut a vote in the next few days. - Patrick On Thu, Jun 19, 2014 at 10:47 AM, Mingyu Kim m...@palantir.com wrote: Hi

Re: Trailing Tasks Saving to HDFS

2014-06-19 Thread Patrick Wendell
I'll make a comment on the JIRA - thanks for reporting this, let's get to the bottom of it. On Thu, Jun 19, 2014 at 11:19 AM, Surendranauth Hiraman suren.hira...@velos.io wrote: I've created an issue for this but if anyone has any advice, please let me know. Basically, on about 10 GBs of

Re: Enormous EC2 price jump makes r3.large patch more important

2014-06-17 Thread Patrick Wendell
Hey Jeremy, This is patched in the 1.0 and 0.9 branches of Spark. We're likely to make a 1.0.1 release soon (this patch being one of the main reasons), but if you are itching for this sooner, you can just checkout the head of branch-1.0 and you will be able to use r3.XXX instances. - Patrick On

Re: Enormous EC2 price jump makes r3.large patch more important

2014-06-17 Thread Patrick Wendell
By the way, in case it's not clear, I mean our maintenance branches: https://github.com/apache/spark/tree/branch-1.0 On Tue, Jun 17, 2014 at 8:35 PM, Patrick Wendell pwend...@gmail.com wrote: Hey Jeremy, This is patched in the 1.0 and 0.9 branches of Spark. We're likely to make a 1.0.1

Re: Enormous EC2 price jump makes r3.large patch more important

2014-06-17 Thread Patrick Wendell
to lean in the direction of Cassandra as the distributed data store... On Wed, Jun 18, 2014 at 1:46 PM, Patrick Wendell pwend...@gmail.com wrote: By the way, in case it's not clear, I mean our maintenance branches: https://github.com/apache/spark/tree/branch-1.0 On Tue, Jun 17, 2014 at 8:35

Re: Wildcard support in input path

2014-06-17 Thread Patrick Wendell
These paths get passed directly to the Hadoop FileSystem API and I think the support globbing out-of-the box. So AFAIK it should just work. On Tue, Jun 17, 2014 at 9:09 PM, MEETHU MATHEW meethu2...@yahoo.co.in wrote: Hi Jianshi, I have used wild card characters (*) in my program and it

Re: Java IO Stream Corrupted - Invalid Type AC?

2014-06-17 Thread Patrick Wendell
Out of curiosity - are you guys using speculation, shuffle consolidation, or any other non-default option? If so that would help narrow down what's causing this corruption. On Tue, Jun 17, 2014 at 10:40 AM, Surendranauth Hiraman suren.hira...@velos.io wrote: Matt/Ryan, Did you make any headway

Re: Setting spark memory limit

2014-06-09 Thread Patrick Wendell
I you run locally then Spark doesn't launch remote executors. However, in this case you can set the memory with --spark-driver-memory flag to spark-submit. Does that work? - Patrick On Mon, Jun 9, 2014 at 3:24 PM, Henggang Cui cuihengg...@gmail.com wrote: Hi, I'm trying to run the SimpleApp

Re: Strange problem with saveAsTextFile after upgrade Spark 0.9.0-1.0.0

2014-06-08 Thread Patrick Wendell
Paul, Could you give the version of Java that you are building with and the version of Java you are running with? Are they the same? Just off the cuff, I wonder if this is related to: https://issues.apache.org/jira/browse/SPARK-1520 If it is, it could appear that certain functions are not in

Re: Strange problem with saveAsTextFile after upgrade Spark 0.9.0-1.0.0

2014-06-08 Thread Patrick Wendell
Also I should add - thanks for taking time to help narrow this down! On Sun, Jun 8, 2014 at 1:02 PM, Patrick Wendell pwend...@gmail.com wrote: Paul, Could you give the version of Java that you are building with and the version of Java you are running with? Are they the same? Just off

Re: Strange problem with saveAsTextFile after upgrade Spark 0.9.0-1.0.0

2014-06-08 Thread Patrick Wendell
12:05 org/apache/spark/rdd/RDD$anonfun$saveAsTextFile$1.class 1560 06-08-14 12:05 org/apache/spark/rdd/RDD$anonfun$saveAsTextFile$2.class Best. -- Paul — p...@mult.ifario.us | Multifarious, Inc. | http://mult.ifario.us/ On Sun, Jun 8, 2014 at 1:02 PM, Patrick Wendell pwend

Re: Setting executor memory when using spark-shell

2014-06-06 Thread Patrick Wendell
In 1.0+ you can just pass the --executor-memory flag to ./bin/spark-shell. On Fri, Jun 6, 2014 at 12:32 AM, Oleg Proudnikov oleg.proudni...@gmail.com wrote: Thank you, Hassan! On 6 June 2014 03:23, hassan hellfire...@gmail.com wrote: just use -Dspark.executor.memory= -- View this

Re: Spark 1.0 embedded Hive libraries

2014-06-06 Thread Patrick Wendell
They are forked and slightly modified for two reasons: (a) Hive embeds a bunch of other dependencies in their published jars such that it makes it really hard for other projects to depend on them. If you look at the hive-exec jar they copy a bunch of other dependencies directly into this jar. We

Re: Spark 1.0.0 fails if mesos.coarse set to true

2014-06-04 Thread Patrick Wendell
Hey, thanks a lot for reporting this. Do you mind making a JIRA with the details so we can track it? - Patrick On Wed, Jun 4, 2014 at 9:24 AM, Marek Wiewiorka marek.wiewio...@gmail.com wrote: Exactly the same story - it used to work with 0.9.1 and does not work anymore with 1.0.0. I ran tests

Re: is there any easier way to define a custom RDD in Java

2014-06-04 Thread Patrick Wendell
Hey There, This is only possible in Scala right now. However, this is almost never needed since the core API is fairly flexible. I have the same question as Andrew... what are you trying to do with your RDD? - Patrick On Wed, Jun 4, 2014 at 7:49 AM, Andrew Ash and...@andrewash.com wrote: Just

Re: error with cdh 5 spark installation

2014-06-04 Thread Patrick Wendell
Hey Chirag, Those init scripts are part of the Cloudera Spark package (they are not in the Spark project itself) so you might try e-mailing their support lists directly. - Patrick On Wed, Jun 4, 2014 at 7:19 AM, chirag lakhani chirag.lakh...@gmail.com wrote: I recently spun up an AWS cluster

Re: Can't seem to link external/twitter classes from my own app

2014-06-04 Thread Patrick Wendell
Hey Jeremy, The issue is that you are using one of the external libraries and these aren't actually packaged with Spark on the cluster, so you need to create an uber jar that includes them. You can look at the example here (I recently did this for a kafka project and the idea is the same):

Re: Trouble launching EC2 Cluster with Spark

2014-06-04 Thread Patrick Wendell
Hey Sam, You mentioned two problems here, did your VPC error message get fixed or only the key permissions problem? I noticed we had some report a similar issue with the VPC stuff a long time back (but there is no real resolution here): https://spark-project.atlassian.net/browse/SPARK-1166 If

Re: spark 1.0 not using properties file from SPARK_CONF_DIR

2014-06-03 Thread Patrick Wendell
You can set an arbitrary properties file by adding --properties-file argument to spark-submit. It would be nice to have spark-submit also look in SPARK_CONF_DIR as well by default. If you opened a JIRA for that I'm sure someone would pick it up. On Tue, Jun 3, 2014 at 7:47 AM, Eugen Cepoi

Re: spark 1.0.0 on yarn

2014-06-02 Thread Patrick Wendell
. -Simon On Sun, Jun 1, 2014 at 9:03 PM, Patrick Wendell pwend...@gmail.com wrote: As a debugging step, does it work if you use a single resource manager with the key yarn.resourcemanager.address instead of using two named resource managers? I wonder if somehow the YARN client can't

Re: How can I make Spark 1.0 saveAsTextFile to overwrite existing file

2014-06-02 Thread Patrick Wendell
Hey There, The issue was that the old behavior could cause users to silently overwrite data, which is pretty bad, so to be conservative we decided to enforce the same checks that Hadoop does. This was documented by this JIRA: https://issues.apache.org/jira/browse/SPARK-1100

Re: How can I make Spark 1.0 saveAsTextFile to overwrite existing file

2014-06-02 Thread Patrick Wendell
-1677 is talking about the same thing? How about assigning it to me? I think I missed the configuration part in my previous commit, though I declared that in the PR description Best, -- Nan Zhu On Monday, June 2, 2014 at 3:03 PM, Patrick Wendell wrote: Hey There, The issue

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