RE: How to get XMI output fie from java jcas?

2018-04-10 Thread Gandhi Rajan Natarajan
Hi Reed, Just check the PipelineRunner class in the link - https://github.com/GoTeamEpsilon/ctakes-rest-service/blob/master/ctakes-web-rest/src/main/java/org/apache/ctakes/rest/service/CtakesRestController.java and see if it helps. Regards, Gandhi From: Reed Villanueva

Re: How to get XMI output fie from java jcas?

2018-04-10 Thread Reed Villanueva
I see, thanks Gandhi. Would you also be able to point me to some source file examples of *reading* from XMIs (like how the ctakesCVD does to populate the "Analysis Results" pane)? I tried tracing down from the org.apache.uima.tools.cvd.CVD package, but could not find where these things are

cTakes Assertion - Subject Extraction

2018-04-10 Thread Mahesh Kanthaswamy
Hi Team, I tried running Assertion pipeline file for subject extraction. Its correctly annotate subject which for patient related instances from the input narration , however it does annotate Patient's father as 'Patient' which is wrong . Can you please let me know what will be change I

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2018-04-10 Thread Okpara, Chinyere
Chinyere Okpara Statistical Data Analyst Department of Surgery Phone (516) 663-9386 cokp...@nyuwinthrop.org [cid:image001.png@01D3D0AB.968B8F70] - The information contained in this transmission may contain privileged and confidential information, including

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2018-04-10 Thread Yingcheng Sun

RE: cTakes Assertion - Subject Extraction [EXTERNAL]

2018-04-10 Thread Mahesh Kanthaswamy
Thanks you so much Tim for your response. I was thinking that I was doing wrong whole day , hence wanted to get it confirmed in the forum. Thanks & Regards, Mahesh K. Upcoming OOO: -Original Message- From: Miller, Timothy [mailto:timothy.mil...@childrens.harvard.edu] Sent: Tuesday,

RE: How to get XMI output fie from java jcas?

2018-04-10 Thread Gandhi Rajan Natarajan
HI Reed, I’m not very sure of CVD result analysis. But we do have an XML parser in cTAKES REST module to parse the output XML and generate JSON output of our desired format. Have a look at this link -

How to get XMI output fie from java jcas?

2018-04-10 Thread Reed Villanueva
How can I get the output of a pipeline built in java as an XMI file similar to how piper files output extracted annotation information in form of XMI files? Eg. I have the code AggregateBuilder builder = new AggregateBuilder(); builder.add( ClinicalPipelineFactory.getDefaultPipeline() );