Re: [gridengine users] GE2011.11 compilation error

2012-07-04 Thread Rayson Ho
On Wed, Jul 4, 2012 at 10:38 AM, Reuti wrote: >> ed.screen.c:(.text+0x7d3): undefined reference to `tputs' > > This looks like the ncurses-devel package is missing. It's a common problem with newer versions of RHEL-based distros. I downloaded CentOS 6.2 & Oracle Linux 6.3... I will install them s

Re: [gridengine users] MPI GAMESS on SGE

2012-07-04 Thread Reuti
Am 26.06.2012 um 15:16 schrieb Semi: > I put this entry in rungms: > > set TARGET=mpi > /storage/openmpi-1.5_openib/bin/mpirun -np $NPROCS > /storage/app/ymiller/gamess_openib/gamess.$VERNO.x $JOB > > when I run: > ./rungms exam01 00 20 > & exam01.log > it works. log attached > > when I try r

Re: [gridengine users] export of environment variables from start_proc_args

2012-07-04 Thread Dave Love
SLIM H.A. writes: > I want to constrain the number of OpenMP threads in a job from within > GridEngine. The user should set this to $NSLOTS in the job script but can > this be enforced by including this in a PE start script? > > I set a start_proc_args script "startopenmp.sh" with argument $pe_

Re: [gridengine users] GE2011.11 compilation error

2012-07-04 Thread Dave Love
Mohamed Adel writes: > Dear all, > > I was trying to compile GE2011.11 in scientific linux and I got the following > error. > Does anyone know how to fix it? > > Thanks in advance, > madel > > gcc: unrecognized option '-R/lib/linux-x64' > ed.screen.o: In function `SetAttributes': > ed.screen.c:(

Re: [gridengine users] GE2011.11 compilation error

2012-07-04 Thread Reuti
Am 04.07.2012 um 10:26 schrieb Mohamed Adel: > Dear all, > > I was trying to compile GE2011.11 in scientific linux and I got the following > error. > Does anyone know how to fix it? > > Thanks in advance, > madel > > gcc: unrecognized option '-R/lib/linux-x64' > ed.screen.o: In function `Se

Re: [gridengine users] export of environment variables from start_proc_args

2012-07-04 Thread Reuti
Hi, Am 04.07.2012 um 14:57 schrieb SLIM H.A.: > I want to constrain the number of OpenMP threads in a job from within > GridEngine. The user should set this to $NSLOTS in the job script but can > this be enforced by including this in a PE start script? > > I set a start_proc_args script "start

Re: [gridengine users] export of environment variables from start_proc_args

2012-07-04 Thread Hung-Sheng Tsao Ph.D.
may be use #$ -v OMP_NUM_THREADS=$1 in qsub script -v variable[=value],... Available for/qsub/,/qrsh/ (with command argument) and /qalter/. Defines or redefines the environment variables to be exported to the execution context of the job. If

[gridengine users] export of environment variables from start_proc_args

2012-07-04 Thread SLIM H.A.
I want to constrain the number of OpenMP threads in a job from within GridEngine. The user should set this to $NSLOTS in the job script but can this be enforced by including this in a PE start script? I set a start_proc_args script "startopenmp.sh" with argument $pe_slots in an openmp PE and th

Re: [gridengine users] integrate BLCR and SGE

2012-07-04 Thread Reuti
Am 04.07.2012 um 05:59 schrieb mahbube rustaee: > parallel application . I test it for multiprocess , multithreaded now. > (Open MPI) 1.4.3 > lines that makes checkpoint at blcr_chechpoint .sh (checkpoint script > defined for BLCR checkpoint) Is it working fine outside of SGE? -- Reuti > cp

[gridengine users] GE2011.11 compilation error

2012-07-04 Thread Mohamed Adel
Dear all, I was trying to compile GE2011.11 in scientific linux and I got the following error. Does anyone know how to fix it? Thanks in advance, madel gcc: unrecognized option '-R/lib/linux-x64' ed.screen.o: In function `SetAttributes': ed.screen.c:(.text+0x7d3): undefined reference to `tputs'