Re: [gridengine users] h_rt issues

2013-06-20 Thread Vamsi Krishna
gadmin 8851 4992 0 May14 ?00:00:00 sge_shepherd-1434388 -bg the actual process is also there On Thu, Jun 20, 2013 at 2:14 PM, Reuti re...@staff.uni-marburg.de wrote: Am 12.06.2013 um 06:19 schrieb Vamsi Krishna: h_rt h_rt TIME

[gridengine users] h_rt issues

2013-06-11 Thread Vamsi Krishna
h_rt h_rt TIME= YES NO 0:0:00 s_rt s_rt TIME= YES NO 0:0:00 defined in queue as queue1: s_rt INFINITY h_rt

[gridengine users] function to submit inside bash script

2013-06-04 Thread Vamsi Krishna
Hi, i have function insdie bash script #!/bin/bash test(){ echo $HOSTNAME } qrsh -V -now no -pty y test can i submit function using qrsh interactive way Regards PVK ___ users mailing list users@gridengine.org

Re: [gridengine users] h_vmem

2013-05-29 Thread Vamsi Krishna
pages available regarding this issue. It seems to be RH related. Regards, Marco On 05/27/2013 06:32 AM, Vamsi Krishna wrote: yes it is there, It is accepting. it took some time to read the settings. qconf -sc | grep h_vmem h_vmem h_vmem

Re: [gridengine users] h_vmem

2013-05-27 Thread Vamsi Krishna
is you h_vmem=64G set, do you get it via a load sensor or is is setup for each execution host? libsepol.so.1 is not a gridengine library. There are many pages available regarding this issue. It seems to be RH related. Regards, Marco On 05/27/2013 06:32 AM, Vamsi Krishna wrote: yes

[gridengine users] h_vmem

2013-05-26 Thread Vamsi Krishna
Hi, i have three queues queue1.q, queue2.q and queue3.q. I have nodeA part of queue3.q. h_vmem is configured to restrict user not to overcomit the job using the following settings. but job is never submitted either interactive or batch mode. qconf -sc | grep h_vmem h_vmem

Re: [gridengine users] h_vmem

2013-05-26 Thread Vamsi Krishna
qconf -sq queue3.q | grep h_vmem h_vmemINFINITY On Mon, May 27, 2013 at 12:13 AM, Vamsi Krishna vkpolise...@gmail.comwrote: Hi, i have three queues queue1.q, queue2.q and queue3.q. I have nodeA part of queue3.q. h_vmem is configured to restrict user not to overcomit the job

Re: [gridengine users] h_vmem

2013-05-26 Thread Vamsi Krishna
in your qrsh command? Regards Marco Vamsi Krishna vkpolise...@gmail.com schrieb: qconf -sq queue3.q | grep h_vmem h_vmemINFINITY On Mon, May 27, 2013 at 12:13 AM, Vamsi Krishna vkpolise...@gmail.comwrote: Hi, i have three queues queue1.q, queue2.q and queue3.q. I have

Re: [gridengine users] kill the job after one hour

2013-04-16 Thread Vamsi Krishna
yes it was configured. thanks for clarification. -pvk On Tue, Apr 16, 2013 at 8:50 PM, Reuti re...@staff.uni-marburg.de wrote: Am 16.04.2013 um 17:04 schrieb Vamsi Krishna: how to kill the jobs which are running more than one hour, i have configured h_rt 01:00:00 in queue

[gridengine users] mem_used by the job

2013-03-29 Thread Vamsi Krishna
Hi, is there a way to find the memory used by the running job using grid commands. Regards VK ___ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users

Re: [gridengine users] open the output

2013-03-20 Thread Vamsi Krishna
:SGE_STDOUT_PATH=/home/reuti/foobar_5849 $ qstat -j job_id | sed -n -e /^context: */s///p| tr , \n | grep SGE_STDOUT_PATH SGE_STDOUT_PATH=/home/reuti/foobar_5849 (We put even more entries in the job context, hence the `grep` here.) -- Reuti Regards On Mon, Mar 18, 2013 at 8:22 AM, Vamsi

[gridengine users] open the output

2013-03-18 Thread Vamsi Krishna
hi i would like to stream the output log file similar like tail -f output.file. is there a way to open automatically the -o 'output.file' in the same terminal or in new terminal when the job is submitted to the Grid. ___ users mailing list

Re: [gridengine users] usage of make -j

2013-03-14 Thread Vamsi Krishna
- 1347219 10.35000 batch_test user1r 03/15/2013 01:21:33 batch.q@node1 12 1347220 1.6 batch_test user1 qw03/15/2013 01:20:36 12 On Fri, Mar 8, 2013 at 9:29 PM, Vamsi Krishna vkpolise...@gmail.com

Re: [gridengine users] usage of make -j

2013-03-08 Thread Vamsi Krishna
Thanks Reuti, Progressing well. - V On Wed, Mar 6, 2013 at 2:10 AM, Christopher Heiny che...@synaptics.comwrote: On 03/05/2013 10:35 AM, Reuti wrote: Hi, Am 05.03.2013 um 18:41 schrieb Vamsi Krishna: is there any way to run make -j slots in node when we submit to batch environment

[gridengine users] usage of make -j

2013-03-05 Thread Vamsi Krishna
Hi, is there any way to run make -j slots in node when we submit to batch environment to use all the slots with -pe slots in node Regards PVK ___ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users

[gridengine users] memory utilization of job using qstat

2012-12-11 Thread Vamsi Krishna
hi is there any grid engine command to find out the actual memory utilization of job submitted? Regards PVK ___ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users

Re: [gridengine users] memory utilization of job using qstat

2012-12-11 Thread Vamsi Krishna
Thanks Jesse, yes it always wrap around 4G, seems bug. On Wed, Dec 12, 2012 at 1:08 AM, Jesse Becker becker...@mail.nih.govwrote: On Fri, Dec 07, 2012 at 09:38:26AM +0530, Vamsi Krishna wrote: hi is there any grid engine command to find out the actual memory utilization of job submitted

Re: [gridengine users] exit status 140

2012-09-27 Thread Vamsi Krishna
was also killed., does qmaster needs reboot. On Thu, Sep 27, 2012 at 9:39 PM, Reuti re...@staff.uni-marburg.de wrote: Am 26.09.2012 um 13:48 schrieb Vamsi Krishna: *Exit code 140:* The job exceeded the wall clock time limit, h_rt is setto infinity submit with -notify by default

Re: [gridengine users] exit status 140

2012-09-27 Thread Vamsi Krishna
in default/spool/`hostname`/messages starting up SGE 6.2u5 (lx24-amd64) Regards PVK On Thu, Sep 27, 2012 at 11:50 PM, Reuti re...@staff.uni-marburg.de wrote: Am 27.09.2012 um 19:41 schrieb Vamsi Krishna: those were inputs for debugging. job 1058200.1 failed on host assumedly after job because: job

[gridengine users] exit status 140

2012-09-26 Thread Vamsi Krishna
Hi, some of the batch jobs are killed and qacct -j of the job id failed 100 : assumedly after job exit_status 140 what could be the reason. Regards PVK ___ users mailing list users@gridengine.org https://gridengine.org/mailman/listinfo/users

Re: [gridengine users] exit status 140

2012-09-26 Thread Vamsi Krishna
*Exit code 140:* The job exceeded the wall clock time limit, h_rt is setto infinity submit with -notify by default. --PVK On Wed, Sep 26, 2012 at 12:46 PM, Reuti re...@staff.uni-marburg.de wrote: Am 26.09.2012 um 08:53 schrieb Vamsi Krishna: some of the batch jobs are killed and qacct -j

Re: [gridengine users] mem_token + mem_free

2012-02-09 Thread vamsi krishna
for event 779087. EVENT DEL JOB 552060.1 failed On Fri, Feb 3, 2012 at 2:46 AM, Reuti re...@staff.uni-marburg.de wrote: Am 02.02.2012 um 17:27 schrieb vamsi krishna: qhost -F mem_token Host Resource(s): hc:mem_token=45.209G qhost -F mem_free node:lx24-amd64 8

Re: [gridengine users] mem_token + mem_free

2012-02-02 Thread vamsi krishna
, Reuti re...@staff.uni-marburg.de wrote: Am 02.02.2012 um 17:04 schrieb vamsi krishna: Case1: qconf -sc mem_free mf MEMORY =YES NO 00 mem_token mem_token MEMORY =YES

[gridengine users] load_thresholds

2012-01-31 Thread vamsi krishna
Hi is there any other parameter for load_thresholds, my configuration: load_thresholds np_load_avg=1.75 suspend_thresholdsNONE i have the followinng sched configuration: queue_sort_method seqno job_load_adjustments np_load_avg=0.50

[gridengine users] queue is distributing uneven

2012-01-02 Thread vamsi krishna
Hi Experts, I am having interactive queue submitting the jobs to only few machines even if there are available slots in other machines. how can i distribute the jobs depending on memory and slots free. i was having the following algorithm default schedule_interval