Re: [gridengine users] Reporting SGE via QACCT output

Am 19.06.2014 um 03:08 schrieb Sangmin Park: Hi, Do you mean that I have to compile SGE? Doesn't it remove all log data that was generated before? The aacounting file? No. But the memory of the share-tree-usage will be gone. If I have to do, I would. Or make the changes to PAM, then

Re: [gridengine users] Reporting SGE via QACCT output

Hi, Do you mean that I have to compile SGE? Doesn't it remove all log data that was generated before? If I have to do, I would. And the reason why the load is 12 even thought no slots is that we have several queue. all.q does not allowed, but the other queue can. This users used another queue.

Re: [gridengine users] Reporting SGE via QACCT output

Hi, Am 17.06.2014 um 03:51 schrieb Sangmin Park: It looks like okay. But, the usage reporting still does not work. This is the 'ps -e f' result. 11151 ?Sl 0:14 /opt/sge/bin/lx24-amd64/sge_execd 16851 ?S 0:00 \_ sge_shepherd-46865 -bg 16877 ?Ss 0:00 |

Re: [gridengine users] Reporting SGE via QACCT output

Am 16.06.2014 um 03:43 schrieb Sangmin Park: Hi, 'ps -e f' displays nice process tree. thanks, mate! and sge_machinefile_21431 file contain information about computing node and number of cores which a job is running. sge_machinefile_21431 just contains a line including lion07:12.

Re: [gridengine users] Reporting SGE via QACCT output

Hi, It looks like okay. But, the usage reporting still does not work. This is the 'ps -e f' result. 11151 ?Sl 0:14 /opt/sge/bin/lx24-amd64/sge_execd 16851 ?S 0:00 \_ sge_shepherd-46865 -bg 16877 ?Ss 0:00 | \_ bash

Re: [gridengine users] Reporting SGE via QACCT output

Hi, 'ps -e f' displays nice process tree. thanks, mate! and sge_machinefile_21431 file contain information about computing node and number of cores which a job is running. sge_machinefile_21431 just contains a line including lion07:12. 'qstat -f' shows just short name with queuename as below.

Re: [gridengine users] Reporting SGE via QACCT output

Am 13.06.2014 um 04:30 schrieb Sangmin Park: Yes, both files, 'mpiexec' and 'mpiexec.hydra', are in the bin directory inside Intel MPI. But, 'mpiexec' file is linked to 'mpiexec.py' file. Does it okay if I create a symbolic link 'mpiexec' pointing to 'mpiexec.hydra' instead of 'mpiexec.py'

Re: [gridengine users] Reporting SGE via QACCT output

Am 13.06.2014 um 06:50 schrieb Sangmin Park: Hi, I've checked his job when it's running. I've checked it via 'ps -ef' command and found that his job is using mpiexec.hydra. Putting a blank between -e and f will give a nice process tree. And 'qrsh' is using '-inherit' option. Here's

Re: [gridengine users] Reporting SGE via QACCT output

Am 12.06.2014 um 04:23 schrieb Sangmin Park: I've checked the version of Intel MPI. He uses Intel MPI 4.0.3.008 version. Our system uses rsh to access computing nodes. SGE doses, too. Please let me know how to cehck which one is used 'mpiexec.hydry' or 'mpiexec'. Do you have both files

Re: [gridengine users] Reporting SGE via QACCT output

Hi, Yes, both files, 'mpiexec' and 'mpiexec.hydra', are in the bin directory inside Intel MPI. But, 'mpiexec' file is linked to 'mpiexec.py' file. Does it okay if I create a symbolic link 'mpiexec' pointing to 'mpiexec.hydra' instead of 'mpiexec.py' ? Since there are several running jobs on the

Re: [gridengine users] Reporting SGE via QACCT output

Hi, I've checked his job when it's running. I've checked it via 'ps -ef' command and found that his job is using mpiexec.hydra. And 'qrsh' is using '-inherit' option. Here's details. p012chm 21424 21398 0 13:20 ?00:00:00 bash /opt/sge/default/spool/lion07/job_scripts/46651 p012chm

Re: [gridengine users] Reporting SGE via QACCT output

Hi, Am 11.06.2014 um 02:38 schrieb Sangmin Park: For the best performance, we recommend users to use 8 cores on a single particular node, not distributed with multi node. Before I said, he uses VASP application compiled with Intel MPI. So he uses Intel MPI now. Which version of Intel MPI?

Re: [gridengine users] Reporting SGE via QACCT output

Hi, I've checked the version of Intel MPI. He uses Intel MPI 4.0.3.008 version. Our system uses rsh to access computing nodes. SGE doses, too. Please let me know how to cehck which one is used 'mpiexec.hydry' or 'mpiexec'. Sangmin On Wed, Jun 11, 2014 at 6:46 PM, Reuti

[gridengine users] Reporting SGE via QACCT output

Hello, I'm very confused about the output of qacct command. I thought CPU column time is the best way to measure resource usage by users through this web page, https://wiki.duke.edu/display/SCSC/Checking+SGE+Usage But, I have some situation. One of users in my institution, actually this user is

Re: [gridengine users] Reporting SGE via QACCT output

Am 10.06.2014 um 08:00 schrieb Sangmin Park: Hello, I'm very confused about the output of qacct command. I thought CPU column time is the best way to measure resource usage by users through this web page, https://wiki.duke.edu/display/SCSC/Checking+SGE+Usage But, I have some situation.

Re: [gridengine users] Reporting SGE via QACCT output

Hi, Am 10.06.2014 um 10:21 schrieb Sangmin Park: This user does always parallel job using VASP application. Usually, he uses 8 cores per a job. Lots of this kind of job have been submitted by the user. 8 cores on a particular node or 8 slots across the cluster? What MPI implementation does

Re: [gridengine users] Reporting SGE via QACCT output

Hi, Reuti For the best performance, we recommend users to use 8 cores on a single particular node, not distributed with multi node. Before I said, he uses VASP application compiled with Intel MPI. So he uses Intel MPI now. --Sangmin On Tue, Jun 10, 2014 at 5:58 PM, Reuti