Re: [gridengine users] Configure gridengine on CentOS 6.3

2012-11-07 Thread Petter Gustad
From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS 6.3 Date: Tue, 30 Oct 2012 11:27:49 +0100 Just use the version you have already in the shared /usr/sge or your particular mountpoint. I should probably try this first, at least to verify

Re: [gridengine users] Configure gridengine on CentOS 6.3

2012-11-07 Thread Reuti
Am 07.11.2012 um 15:46 schrieb Petter Gustad: From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS 6.3 Date: Tue, 30 Oct 2012 11:27:49 +0100 Just use the version you have already in the shared /usr/sge or your particular mountpoint. I

Re: [gridengine users] Configure gridengine on CentOS 6.3

2012-11-07 Thread Petter Gustad
From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS 6.3 Date: Wed, 7 Nov 2012 16:37:22 +0100 Am 07.11.2012 um 15:46 schrieb Petter Gustad: From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS

Re: [gridengine users] Configure gridengine on CentOS 6.3

2012-11-07 Thread Reuti
Am 07.11.2012 um 18:49 schrieb Petter Gustad: From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS 6.3 Date: Wed, 7 Nov 2012 16:37:22 +0100 Am 07.11.2012 um 15:46 schrieb Petter Gustad: From: Reuti re...@staff.uni-marburg.de Subject: Re:

Re: [gridengine users] Configure gridengine on CentOS 6.3

2012-11-07 Thread Petter Gustad
From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS 6.3 Date: Wed, 7 Nov 2012 20:26:54 +0100 Am 07.11.2012 um 18:49 schrieb Petter Gustad: From: Reuti re...@staff.uni-marburg.de Subject: Re: [gridengine users] Configure gridengine on CentOS

[gridengine users] Intermittent commlib errors with MPI jobs

2012-11-07 Thread Brendan Moloney
Hello, I have MPICH2 tightly integrated with OGS 2011.11. Everything is working great in general. I have noticed when I submit a moderate number of small MPI jobs (e.g. 100 jobs each using two cores) that I will get intermittent commlib errors like: commlib error: got select error (Broken

[gridengine users] Queues using less than slots=

2012-11-07 Thread Joseph Farran
Hi. I am using SGE 8.1.2 with several queues and recently, several of my 64-slots queues are not scheduling the full 64-cores. So if I submit 64 1-core jobs, only 57 or so are schedule per node instead of 64. If I submit 4 16-core pe jobs, only 3 of

Re: [gridengine users] Queues using less than slots=

2012-11-07 Thread Joseph Farran
Ok, I found one clue.qstat and qstat -f are reporting different number of cores ( slots ) in use: Qstat is reporting 25 + 32 + 32 cores while qstat -f reports 25 + 15 + 10 cores: qstat -f ( for compute-2-6 ) bio@compute-2-6.local BIP 0/50/643.79 lx-amd64 45647

Re: [gridengine users] Queues using less than slots=

2012-11-07 Thread Reuti
Am 08.11.2012 um 07:36 schrieb Joseph Farran: Ok, I found one clue.qstat and qstat -f are reporting different number of cores ( slots ) in use: Qstat is reporting 25 + 32 + 32 cores while qstat -f reports 25 + 15 + 10 cores: qstat -f ( for compute-2-6 ) bio@compute-2-6.local

Re: [gridengine users] Intermittent commlib errors with MPI jobs

2012-11-07 Thread Reuti
Hi, Am 08.11.2012 um 05:11 schrieb Brendan Moloney: Hello, I have MPICH2 tightly Which version? It should work out-of-the-box with SGE. integrated with OGS 2011.11. Everything is working great in general. I have noticed when I submit a moderate number of small MPI jobs (e.g. 100 jobs