Re: [OMPI users] "ssh: connect to host XXX.XXX.XXX.XX port 22: connection timed out" errors during mpirun

2013-06-05 Thread Ralph Castain
It has nothing to do with OMPI - this is an ssh issue. I suspect you are simply overwhelming the connection system. Maybe you could tell us what you are actually trying to accomplish - running thousands of mpiruns in parallel seems a tad extreme. On Jun 4, 2013, at 9:48 AM, vacate wrote: > He

Re: [OMPI users] problem with -lmpi

2013-06-05 Thread Jeff Squyres (jsquyres)
Note that this mailing list is for Open MPI -- which is a different implementation of MPI than MPICH. Ralph's answer might be correct, but we can't say for sure because we can't answer questions about MPICH here. :-) On Jun 5, 2013, at 11:03 AM, Florian Beutler wrote: > Hi > I just installe

Re: [OMPI users] problem with -lmpi

2013-06-05 Thread Ralph Castain
I would guess that adding the -lmpi might create an issue as the "mpif90" wrapper already has it in there. Are you adding it for some reason? On Jun 5, 2013, at 11:03 AM, Florian Beutler wrote: > Hi > I just installed openMPI and the installation works without any trouble. But > when I want t

[OMPI users] problem with -lmpi

2013-06-05 Thread Florian Beutler
Hi I just installed openMPI and the installation works without any trouble. But when I want to use the mpif90 compiler, it gives me the following error bash-3.2$ mpif90 -lmpi ld: library not found for -lmpi I was wondering whether there is a configure flag which I forgot to set? My configure comm

Re: [OMPI users] How to diagnose bus error with 1.6.4

2013-06-05 Thread Blosch, Edwin L
I've dug a little deeper and thing the problem has something to do with 10MB sized /tmp filesystem. [bloscel@k1n11 ~]$ df -h FilesystemSize Used Avail Use% Mounted on compute_x86_64 32G 1.1G 31G 4% / tmpfs 32G 0 32G 0% /dev/shm tmpfs

[OMPI users] How to diagnose bus error with 1.6.4

2013-06-05 Thread Blosch, Edwin L
I am running into a bus error that does not happen with MVAPICH, and I am guessing it has something to do with shared-memory communication. Has anyone had a similar experience or have any insights on what this could be? Thanks [k1n08:12688] mca: base: components_open: Looking for shmem compone

Re: [OMPI users] openmpi-lsb_launch failed

2013-06-05 Thread Ralph Castain
Could you please tell us the OMPI version you are using? On Jun 5, 2013, at 6:09 AM, "Murthy, Mahalakshmi (GE Global Research, consultant)" wrote: > Hi Team, > > We have a concern when we launch Fluent with openmpi we get the following > error message. > =

[OMPI users] openmpi-lsb_launch failed

2013-06-05 Thread Murthy, Mahalakshmi (GE Global Research, consultant)
Hi Team, We have a concern when we launch Fluent with openmpi we get the following error message. === ORTE_ERROR_LOG: The specified application failed to start in file plm_lsf_module.c at line 308 lsb