Hi,
Try waiting on all gathers at the same time, not one by one (this is
what non blocking collectives are made for!)
Cheers,
Matthieu
2014-04-05 10:35 GMT+01:00 Zehan Cui :
> Hi,
>
> I'm testing the non-blocking collective of OpenMPI-1.8.
>
> I have two nodes with Infiniband to perform allgath
Hi,
I'm testing the non-blocking collective of OpenMPI-1.8.
I have two nodes with Infiniband to perform allgather on totally 128MB data.
I split the 128MB data into eight pieces, and perform computation and
MPI_Iallgatherv() on one piece of data each iteration, hoping that the
MPI_Iallgatherv()
Mpirun *--mca btl ^openib --mca btl_tcp_if_include eth0* -np 16
-machinefile mf mpiblast -d all.fas -p blastn -i query.fas -o out.txt
was the command i executed on cluster...
On Sat, Apr 5, 2014 at 12:34 PM, Nisha Dhankher -M.Tech(CSE) <
nishadhankher-coaese...@pau.edu> wrote:
> sorry Ralph m
sorry Ralph my mistake its not names...it is "it does not happen on same
nodes."
On Sat, Apr 5, 2014 at 12:33 PM, Nisha Dhankher -M.Tech(CSE) <
nishadhankher-coaese...@pau.edu> wrote:
> same vm on all machines that is virt-manager
>
>
> On Sat, Apr 5, 2014 at 12:32 PM, Nisha Dhankher -M.Tech(CSE
same vm on all machines that is virt-manager
On Sat, Apr 5, 2014 at 12:32 PM, Nisha Dhankher -M.Tech(CSE) <
nishadhankher-coaese...@pau.edu> wrote:
> opmpi version 1.4.3
>
>
> On Fri, Apr 4, 2014 at 8:13 PM, Ralph Castain wrote:
>
>> Okay, so if you run mpiBlast on all the non-name nodes, every
opmpi version 1.4.3
On Fri, Apr 4, 2014 at 8:13 PM, Ralph Castain wrote:
> Okay, so if you run mpiBlast on all the non-name nodes, everything is
> okay? What do you mean by "names nodes"?
>
>
> On Apr 4, 2014, at 7:32 AM, Nisha Dhankher -M.Tech(CSE) <
> nishadhankher-coaese...@pau.edu> wrote:
>
