Re: [OMPI users] 'AINT' undeclared

2016-05-10 Thread Gilles Gouaillardet
Ilias, at first glance, you are using the PGI preprocessor (!) can you re-run configure with CPP=cpp, or after removing all PGI related environment variables, and see it it helps ? Cheers, Gilles On Wednesday, May 11, 2016, Ilias Miroslav wrote: >

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Jeff Squyres (jsquyres)
On May 10, 2016, at 5:05 PM, Gilles Gouaillardet wrote: > > I was basically suggesting you open a few ports to anyone (e.g. any IP > address), and Jeff suggests you open all ports to a few trusted IP addresses. +1 -- Jeff Squyres jsquy...@cisco.com For

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Gilles Gouaillardet
I was basically suggesting you open a few ports to anyone (e.g. any IP address), and Jeff suggests you open all ports to a few trusted IP addresses. btw, how many network ports do you have ? if you have two ports (e.g. eth0 for external access and eth1 for private network) and MPI should only use

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Llolsten Kaonga
Hello Jeff, I think what you suggest is likely exactly what we want to see happen. We run the interop tests with at least two servers, sometimes more. We also have other devices (InfiniBand or RoCE switches) between the servers. I will have to ask a stupid question here but when you suggest that

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Jeff Squyres (jsquyres)
Open MPI generally needs to be able to communicate on random TCP ports between machines in the MPI job (and the machine where mpirun is invoked, if that is a different machine). You could also open your firewall to trust random TCP connections just between the servers in your cluster. > On

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Llolsten Kaonga
Hello Orion, I actually rather like the new CentOS 7.2 system better and would like to not remove firewalld. We will try Gilles' suggestion and see what happens. I thank you. -- Llolsten -Original Message- From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Orion Poplawski

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Orion Poplawski
On 05/10/2016 09:24 AM, Llolsten Kaonga wrote: > Hello Durga, > > As I mentioned earlier, up to version 1.8.2, we would just disable SELinux and > the IPv4 firewall and things run smoothly. It was only when we installed > version 1.10.2 (CentOS 7.2) that we run into these troubles. CentOS 7.2 no

Re: [OMPI users] Question about mpirun mca_oob_tcp_recv_handler error.

2016-05-10 Thread Ralph Castain
This usually indicates that the remote process is using a different OMPI version. You might check to ensure that the paths on the remote nodes are correct. On Tue, May 10, 2016 at 8:46 AM, lzfneu wrote: > Hi everyone, > > I have a problem to consult you, when I cd to the

Re: [OMPI users] No core dump in some cases

2016-05-10 Thread Gus Correa
On 05/09/2016 04:59 PM, dpchoudh . wrote: Hi Gus Thanks for your suggestion. But I am not using any resource manager (i.e. I am launching mpirun from the bash shell.). In fact, both of the two clusters I talked about run CentOS 7 and I launch the job the same way on both of these, yet one of

Re: [OMPI users] 'AINT' undeclared

2016-05-10 Thread Ilias Miroslav
https://www.open-mpi.org/community/lists/users/2016/05/29148.php Dear Gill, Ooops, I don't have SIZEOF_PTRDIFF_T in config.status/config.log. I am attaching config.log, config.status files. This is virtual machine : Linux grid.ui.savba.sk 2.6.32-573.26.1.el6.x86_64 #1 SMP Tue May 3 14:22:07

[OMPI users] Question about mpirun mca_oob_tcp_recv_handler error.

2016-05-10 Thread lzfneu
Hi everyone, I have a problem to consult you, when I cd to the /examples folder contained in the openmpi-1.8.4 package, and test the hello_c example program with mpirun command errors occured: Here are the command and the error messages in details: [user@localhost examples]$ mpirun -np 2

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Llolsten Kaonga
Hello Durga, These are dedicated servers we use to run Interoperability testing and it is just easier for us to use a privileged user account. As I mentioned earlier, up to version 1.8.2, we would just disable SELinux and the IPv4 firewall and things run smoothly. It was only when we

Re: [OMPI users] No core dump in some cases

2016-05-10 Thread Hjelm, Nathan Thomas
btr files are indeed created by open mpi's backtrace mechanism. I think we should revisit it at some point but for now the only effective way i have found to prevent it is to restore the default signal handlers after MPI_Init. Excuse the quoting style. Good sucks.

Re: [OMPI users] Incorrect function call in simple C program

2016-05-10 Thread Gilles Gouaillardet
except if you #include the libc header in your app, *and* your send function has a different prototype, I do not see how clang can issue a warning (except of course if clang "knows" all the libc subroutines ...) Cheers, Gilles On Tuesday, May 10, 2016, Devon Hollowood

Re: [OMPI users] problem with ld for Sun C 5.14 beta and openmpi-dev-4010-g6c9d65c

2016-05-10 Thread Gilles Gouaillardet
Siegmar, this issue was previously reported at http://www.open-mpi.org/community/lists/devel/2016/05/18923.php i just pushed the patch Cheers, Gilles On 5/10/2016 2:27 PM, Siegmar Gross wrote: Hi, I tried to install openmpi-dev-4010-g6c9d65c on my "SUSE Linux Enterprise Server 12

Re: [OMPI users] mpirun command won't run unless the firewalld daemon is disabled

2016-05-10 Thread Gilles Gouaillardet
you can direct OpenMPI to only use a specific range of ports (that should be open in your firewall configuration) mpirun --mca oob_tcp_static_ipv4_ports - ... if you use the tcp btl, you can (also) use mpirun --mca btl_tcp_port_min_v4 --mca btl_tcp_port_range_v4 ... Cheers, Gilles

Re: [OMPI users] Incorrect function call in simple C program

2016-05-10 Thread Devon Hollowood
That worked perfectly. Thank you. I'm surprised that clang didn't emit a warning about this! -Devon On Mon, May 9, 2016 at 3:42 PM, Gilles Gouaillardet < gilles.gouaillar...@gmail.com> wrote: > Devon, > > send() is a libc function that is used internally by Open MPI, and it uses > your user