Best regards,
>
> Frédéric.
>
> PS : of course I did an extensive web search without finding anything
> usefull on my problem.
>
> _______
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I wonder if this is related to the problem reported in
[OMPI users] Bug in MPI_scatterv Fortran-90 implementation
On Thu, Apr 21, 2011 at 7:19 PM, Zhangping Wei wrote:
> Dear all,
>
> I am a beginner of MPI, right now I try to use MPI_GATHERV in my code, the
> test code
;
> >
> > ___
> > users mailing list
> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
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d on other node.
>
> please help me
>
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David Zhang
University of California, San Diego
with the infiniband
> drivers of some sort rather then openmpi (but i'm not sure).
>
> Any thoughts, directions, or tests?
> ___
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University of California, San Diego
hould
> take hours to finish.
>
> How can it reach "finalize" so fast ?
>
> Any help is appreciated.
>
> Jack
>
> _______
> users mailing list
> us...@open-mpi.org
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.
> Phone # off +92518358714
> Cell # +923155145014
>
>
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University of California, San Diego
Saint Louis University
>
>
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ist
> us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users
> ___
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>
>
>
> ___ users mailing list
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> ___
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> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> ___ users mailing list
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> ___
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> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> ___ users mailing list
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> ___
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> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> ___ users mailing list
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>
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Amos Leffler
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University of California, San Diego
> Jack
>
> Mar 9 2011
>
>
>
> ___
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>
>
>
>
> --
> David
om it at the same
> time.
>
> Any help is really appreciated.
>
> thanks
>
> Jack
>
> Mar 9 2011
>
>
>
> ___
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>
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___
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David Zhang
University of California, San Diego
p 3 ./a.out".
>
> Any help will be appreciated.
> Thanks you very much.
>
> --
> eye51
>
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David Zhang
University of California, San Diego
see how MPI_STATUS_SIZE could be getting overwritten.
> >>>
> >>>
> >> Earlier, you showed a preceding PARAMETER declaration setting a new
> value for that name, which would be required to make use of it in this
> context. Apparently, you intend to support only compilers which violate the
> Fortran standard by supporting a separate name space for PARAMETER
> identifiers, so that you can violate the MPI standard by using MPI_
> identifiers in a manner which I believe is called shadowing in C.
> >>
> >> --
> >> Tim Prince
> >> ___
> >> users mailing list
> >> us...@open-mpi.org
> >> http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
> >
>
> ___
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University of California, San Diego
t; > >> {
> > >> int mesg1=1;
> > >> int mesg2=2;
> > >>
> > >> MPI_Isend(, 1, MPI_INT, dest, tag1,
> > MPI_COMM_WORLD, );
> > >> MPI_Isend(, 1, MPI_INT, dest, tag2,
> > MPI_COMM_WORLD, );
> > >>
> > >> MPI_Wait(, );
> > >> printf("sent one message\n");
> > >>
> > >> MPI_Wait(, );
> > >> printf("sent two messages\n");
> > >> }
> > >>
> > >> MPI_Finalize();
> > >> return 0;
> > >> }
> > >>
> > >> And the output of the second failed code:
> > >> ***
> > >> Hello from processor 0 of 2
> > >>
> > >> Received one message
> > >>
> > >> Hello from processor 1 of 2
> > >>
> > >> Sent one message
> > >> ***
> > >>
> > >> Can anyone help to point out why the second code didn't work?
> > >>
> > >> Thanks!
> > >>
> > >> Kong
> > >>
> > >> ___
> > >> users mailing list
> > >> us...@open-mpi.org
> > >> http://www.open-mpi.org/mailman/listinfo.cgi/users
> > >
> > >
> > > --
> > > Jeff Squyres
> > > jsquy...@cisco.com
> > > For corporate legal information go to:
> > > http://www.cisco.com/web/about/doing_business/legal/cri/
> > >
> > >
> > > ___
> > > users mailing list
> > > us...@open-mpi.org
> > > http://www.open-mpi.org/mailman/listinfo.cgi/users
> > >
> >
> >
> >
> > --
> > Xianglong Kong
> > Department of Mechanical Engineering
> > University of Rochester
> > Phone: (585)520-4412
> > MSN: dinosaur8...@hotmail.com
> >
> > ___
> > users mailing list
> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> ___
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University of California, San Diego
trical Engineering and Computer Science.
>
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David Zhang
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has no info as to the process
> that caused that situation.
>
> ------
>
> mpirun: clean termination accomplished
>
> [tsakai@domU-12-31-39-00-D1-F2 ~]$
>
> Mpirun (or somebody else?) asks me password, which I don’t have.
> I end up typing control-C.
>
> Here’s my question:
> How can I get past authentication by mpirun where there is no password?
>
> I would appreciate your help/insight greatly.
>
> Thank you.
>
> Tena Sakai
> tsa...@gallo.ucsf.edu
>
>
>
>
>
>
> ___
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jsquy...@cisco.com
>> For corporate legal information go to:
>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>
>>
>> ___
>> users mailing list
>> us...@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>
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Sent from my mobile device
David Zhang
University of California, San Diego
instability, check the usual suspects such as
> ensuring you have a totally homogeneous environment (same OS, same version
> of OMPI, etc).
>
> Sent from my PDA. No type good.
>
> On Feb 1, 2011, at 4:03 AM, "David Zhang" <solarbik...@gmail.com> wrote:
>
> According
ements magically fixes the
> program, and I usually end up having to go back to a serial solution, which
> is really slow.
>
> If anyone might be able to help me, I would be really really grateful!!
>
> Thank you.
>
> Tom
>
>
> _________
ling list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
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David Zhang
University of California, San Diego
ticular thread it was suggested to use the full path of CC
>> (CC=/usr/local/intel/Compiler/11.0/083/bin/intel64/icc) on the build line
>> but I have no idea where to do this (i.e. which build line).
>> I tried to export the CC env. variable using export
>> CC=/usr/local/intel/Compiler/11.0/083/bin/intel64/icc but I got the same
>> error after running make install again.
>> I hope that anyone has a suggestion (I am a real beginner to Linux).
>>
>> best regards,
>>
>> Tom
>>
>> ___
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>>
>
>
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University of California, San Diego
HPC Server.
>
> I’ve started looking at beowulf clusters, and that lead me to PBS. Am I
> right in assuming that PBS (PBSPro or TORQUE) could be used to do the
> monitoring and the load balancing I thought of?
>
>
>
> Thanks
>
> Olivier
>
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is there any trick
> or work-around to have both –H and —hostfile?
>
> Thank you.
>
> Tena Sakai
> tsa...@gallo.ucsf.edu
>
> ___
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David Zhang
University of California, San Diego
;> fi
>> -
>>
>> The very very strange behaviour is that using the --debug-daemons let my
>> program run succesfully.
>>
>> Thank you in advance and sorry for my bad english
>>
>>
>>
>>
>
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pt to
> "do the right thing". Multiple algorithms are available and the best one is
> chosen based on run-time conditions.
>
> With any luck, you're better off with collective calls. Of course, there
> are no guarantees.
>
> ___
ers could have size N1, not N.
>> I guess the MPI_Scatter call is right.
>> The subsequent code needs to change.
>> The loop should go from data[0] to data[N1-1].
>> (However, be careful with edge cases where the number
>> of processes doesn't divide N evenly.)
>>
>> Alternatively you could use MPI_Alltoallw to scatter the way
>> your code suggests you want to do, but that would be an overkill.
>>
>> ___
>> users mailing list
>> us...@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>
>
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David Zhang
University of California, San Diego
s...@open-mpi.org
> >> http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
> >
> > ___
> > users mailing list
> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
>
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he runtime and having
> the process that launched the runtime becoming part of the list of mpi
> processes,
>
>
>
> Regards,
>
> ___
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j/openmpi/lib/libopen-pal.so.0
> #4 0xf7defbe7 in opal_event_loop () from
> /home/gmaj/openmpi/lib/libopen-pal.so.0
> #5 0xf7de323b in opal_progress () from
> /home/gmaj/openmpi/lib/libopen-pal.so.0
> #6 0xf7c51455 in mca_pml_ob1_send () from
> /home/gmaj/openmpi/lib/open
levant sections of code here would be very helpful.
> >>
> >>
> >> I would tell you to add some printf statements to your code to see what
> >> data is stored in your variables on the master before it sends them to
> >> each node, but Jeff Squyres and I agreed to disagree in a civil manner
> >> on that debugging technique earlier this week, and I'd hate to re-open
> >> those old wounds by suggesting that technique here. ;)
> >>
> >>
> >> --
> >> Prentice
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db -Ormgr=orte -Q
>
> Ashley,
>
> --
>
> Ashley Pittman, Bath, UK.
>
> Padb - A parallel job inspection tool for cluster computing
> http://padb.pittman.org.uk
>
>
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>
> > > > > if (myRank != 0)
> > > > > {
> > > > > do some things.
> > > > > MPI_Finalize();
> > > > > return 0 ;
> > > > > }
> > > > > if (myRank == 0)
> > > > > {
> &
s mailing list
>> us...@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/users
>>
>
>
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University of California, San Diego
since you said you're new to MPI, what command did you use to run the 2
processes?
On Fri, Oct 22, 2010 at 9:58 PM, David Zhang <solarbik...@gmail.com> wrote:
> your code works on mine machine. could be they way you build mpi.
>
> On Fri, Oct 22, 2010 at 7:26 PM, Brand
; machines.
>
> The only thing pertinent I could find is this faq
> http://www.open-mpi.org/faq/?category=running#missing-prereqs but I do
> not know if it applies since I have installed open mpi from the Ubuntu
> repositories and assume the libraries are correctly set.
>
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reinstall MPI
from scratch.
--
David Zhang
University of California, San Diego
ccomplished
>
> I know that LD_LIBRARY_PATH is -not- to blame. /home/ is exported to
> each machine from the master, and each machine uses the same image (and thus
> the same paths). If there was a problem with the path, it would not run.
>
> Any insight would be appreciated.
>
> Thank you,
> Ethan
>
>
>
> --
> Dr. Ethan Deneault
> Assistant Professor of Physics
> SC-234
> University of Tampa
> Tampa, FL 33615
> Office: (813) 257-3555
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his correct, or are we
> just lucky.
>
> T. Rosmond
>
>
>
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University of California, San Diego
epartment
>
> Supercomputing Group
>
> Via Magnanelli 6/3, Casalecchio di Reno (BO) Italy
>
> www.cineca.itTel: +39 051 6171722
>
> g.fatigati [AT] cineca.it
>
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ize?
>
> I am thankful for all your informations
> Greetings Franz Xaver
>
>
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David Zhang
University of California, San Diego
t; Is it possible to treat this problem?
>
> Both Fedora7 and OpenMPI-1.1 are ancient. I'd suggest you upgrade to current
> versions before you invest time debugging this.
>
> /Peter
>
--
Sent from my mobile device
David Zhang
University of California, San Diego
e transmitted via email. The recipient should
> check this email and any attachments for the presence of viruses. The
> company accepts no liability for any damage caused by any virus transmitted
> by this email.
>
> www.wipro.com
>
--
Sent from my mobile device
David Zhang
University of California, San Diego
anotherhost ./hello_c
>
>
> Some help please!
>
>
>
> --
> Osvaldo Reis Junior
> Engenharia de Computação - UEPG
> Laboratório de Genômica e Expressão - LGE
> Universidade Estadual de Campinas - UNICAMP
> MSN: osvaldorei...@hotmail.com
> Skype: osvaldoreisss
> Cel: (19) 8128-5273
>
--
Sent from my mobile device
David Zhang
University of California, San Diego
t;
> Thanks in advance.
>
> David
>
>
>
>
> ___
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David Zhang
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. Can someone confirm this? Is this a bug?
>>
>> Is there any multicast or N to N broadcast where sender processes can
>> avoid participating when they don’t need to?
>>
>> Thanks in advance
>> Randolph
>>
>>
>>
>> ___
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bove code snippet runs fine on my school parallel cluster
> where ifort+intelmpi is installed.
> Is there something special about OpenMPI's MPI_Allreduce function call
> that I should be aware of?
>
> Thanks,
> --
> Hugo Gagnon
>
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gram runs longer time.
> Any help is appreciated.
> Jack
> July 25 2010
>
> _
> Hotmail is redefining busy with tools for the New Busy. Get more from your
> inbox.
> http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2
--
Sent from my mobile device
David Zhang
University of California, San Diego
e call)
> inside a "if (rank== ...) {} " construct?
>
> many thanks
> anton
>
> --
> Anton Shterenlikht
> Room 2.6, Queen's Building
> Mech Eng Dept
> Bristol University
> University Walk, Bristol BS8 1TR, UK
> Tel: +44 (0)117 331 5944
> Fax: +44 (0)117 929 4423
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> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> ___
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>
>
>
> -Inline Attachment Follows-
>
> ___
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>
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>
>
>
> -Inline Attachment Follows-
>
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>
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>
>
>
> ___
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David Zhang
University of California, San Diego
ear All:
>
>> How to find the buffer size of OpenMPI ?
>
>> I need to transfer large data between nodes on a cluster with OpenMPI
>> 1.3.4.
>
>> Many nodes need to send data to the same node .
en, the receiver collect messages from its buffer.
> > If the receiver's buffer is too small, there will be truncate error.
> > Any help is appreciated.
> > Jack
> > July 9 2010
> >
> >
> > Hotmail is redefining busy with tools for the New Busy. Get more from
> your
> > inbox. See how.
> > ___
> > users mailing list
> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
> >
>
> ___
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>
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oo busy. Combine all your e-mail accounts with
> Hotmail. Get
> busy.<http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4>
>
> ___
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busy. Combine all your e-mail accounts with
> Hotmail. Get
> busy.<http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4>
>
> ___
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> http://www.open-mpi.org/mailman/li
> The New Busy is not the too busy. Combine all your e-mail accounts with
> Hotmail. Get
> busy.<http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4>
>
> ___
ommand with MPIrank command. It tells me
> which thread is giving segmentation fault.
> > >>
> > >> Cheers,
> > >>
> > >> Asad
> > >>
> > >> On Thu, Jul 1, 2010 at 4:13 PM, Jack Bryan <dtustud...@hotmail.com>
>
WM_HMP:042010_5>
>
> _______
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
--
David Zhang
University of California, San Diego
> users mailing list
> us...@open-mpi.org
> http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
>
> ------
> The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with
> Hotmail. Get
> busy.<http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5>
>
> ___
> users mailing list
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>
--
David Zhang
University of California, San Diego
bort, the tcp layer can time out but
> mpirun just keeps on running...
>
> Any help greatly appreciated..
> Vlad
>
>
>
>
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> us...@open-mpi.org
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>
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David Zhang
University of California, San Diego
REAL == float, INTEGER ==
> int). It may be easiest to use compilers from the same vendor / family for
> linkage purposes, but it probably isn't 100% necessary.
> >
> >
> Thanks a lot jeff.
>
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David Zhang
University of California, San Diego
ble to be read, but only that the message header has been
> received and that it sufficiently matches that specified matching criteria.
>
>
> David Zhang wrote:
>
> I have modified the code so that all the terminal outputs are done by one
> executable. I have attache
Govind
>
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David Zhang
University of California, San Diego
uring the very beginning; however I don't
even see this when I'm running the code on my mac mini.
On Sat, Jun 5, 2010 at 2:44 PM, David Zhang <solarbik...@gmail.com> wrote:
> Dear all:
>
> I'm using mpi_iprobe to serve as a way to send signals between different
> mpi executables.
tween each number. At least when I ran it on
the supercomputer, this is true during the very beginning; however I don't
even see this when I'm running the code on my mac mini.
On Sat, Jun 5, 2010 at 2:44 PM, David Zhang <solarbik...@gmail.com> wrote:
> Dear all:
>
> I'm using mpi
On Sat, Jun 5, 2010 at 2:44 PM, David Zhang <solarbik...@gmail.com> wrote:
> Dear all:
>
> I'm using mpi_iprobe to serve as a way to send signals between different
> mpi executables. I'm using the following test codes (fortran):
>
> #1
> program send
> implicit
blatantly wrong.
--
David Zhang
University of California, San Diego
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