Re: [OMPI users] Help with multicore AMD machine performance

2012-04-02 Thread Nico Mittenzwey
Hi, I'm benchmarking our (well tested) parallel code on and AMD based system, featuring 2x AMD Opteron(TM) Processor 6276, with 16 cores each for a total of 32 cores. The system is running Scientific Linux 6.1 and OpenMPI 1.4.5. When I run a single core job the performance is as expected. How

Re: [OMPI users] OpenMPI does not see other nodes

2011-01-21 Thread Nico Mittenzwey
On 01/21/2011 12:26 PM, Steffen Brinkmann wrote: /home_dir/openmpi-1.4.3_installation/bin/mpirun -n 32 hostname returns 32 times the same node. What did I do wrong??? You need to tell OpenMPI on which hosts to run - for example by suppling a host file: /home_dir/openmpi-1.4.3_installation/

Re: [OMPI users] Help with some fundamentals

2011-01-20 Thread Nico Mittenzwey
On 01/20/2011 05:50 PM, Olivier SANNIER wrote: What is the behavior in case a node dies or becomes unreachable? Your run will be aborted. However there is checkpoint/restart support for Linux http://www.open-mpi.org/faq/?category=ft As this is a Win32 program, I'll have to take into account tha

Re: [OMPI users] Help with some fundamentals

2011-01-20 Thread Nico Mittenzwey
Hi, What communication layer is used? How do I choose it? The fastest available. You can choose the network by parameters given to mpirun see http://www.open-mpi.org/faq/?category=tuning#mca-def What is the behavior in case a node dies or becomes unreachable? Your run will be aborted. Howe

Re: [OMPI users] new open mpi user questions

2010-10-04 Thread Nico Mittenzwey
Ed Peddycoart wrote: The machines are RHEL 5.4 machines and an older version of Open MPI was already installed. I understand from the faq that I should not simply over write the old installation, but would it be better if I remove the old version or install the new to a different location. I