Re: [OMPI users] Signal 13

2007-03-15 Thread Ralph Castain
Hmmm...well, a few thoughts to hopefully help with the debugging. One initial comment, though - 1.1.2 is quite old. You might want to upgrade to 1.2 (releasing momentarily - you can use the last release candidate in the interim as it is identical). Meantime, looking at this output, there appear to

Re: [OMPI users] Signal 13

2007-03-15 Thread David Bronke
I'm using OpenMPI version 1.1.2. I installed it using gentoo portage, so I think it has the right permissions... I tried doing 'equery f openmpi | xargs ls -dl' and inspecting the permissions of each file, and I don't see much out of the ordinary; it is all owned by root:root, but every file has r

Re: [OMPI users] Signal 13

2007-03-15 Thread Ralph H Castain
It isn't a /dev issue. The problem is likely that the system lacks sufficient permissions to either: 1. create the Open MPI session directory tree. We create a hierarchy of subdirectories for temporary storage used for things like your shared memory file - the location of the head of that tree can

Re: [OMPI users] portability of the executables compiled with OpenMPI

2007-03-15 Thread Michael
On Mar 15, 2007, at 12:18 PM, Michael wrote: I'm having trouble with the portability of executables compiled with OpenMPI. I suspect the sysadms on the HPC system I'm using changed something because I think it worked previously. Apparently there was a misconfiguration, i.e. missing libraries

Re: [OMPI users] Signal 13

2007-03-15 Thread David Bronke
Ok, now that I've figured out what the signal means, I'm wondering exactly what is running into permission problems... the program I'm running doesn't use any functions except printf, sprintf, and MPI_*... I was thinking that possibly changes to permissions on certain /dev entries in newer distros

Re: [OMPI users] Shared Ram used for simple application

2007-03-15 Thread Edmund Sumbar
sebastien.he...@external.thalesgroup.com wrote: Hi, Is there any mean to reduce the shared RAM used by MPI? For a very simple application, I have about 500Mo of shared RAM. Try mpirun --mca mpool_sm_size -np ./a.out ^^ -- Ed[mund] [Sumbar]] Research Suppor

Re: [OMPI users] Signal 13

2007-03-15 Thread McCalla, Mac
Hi, If the perror command is available on your system it will tell you what the message is associated with the signal value. On my system RHEL4U3, it is permission denied. HTH, mac mccalla -Original Message- From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] O

Re: [OMPI users] Signal 13

2007-03-15 Thread Mike Houston
I've been having similar issues with brand new FC5/6 and RHEL5 machines, but our FC4/RHEL4 machines are just fine. On the FC5/6 RHEL5 machines, I can get things to run as root. There must be some ACL or security setting issue that's enabled by default on the newer distros. If I figure it out

[OMPI users] Signal 13

2007-03-15 Thread David Bronke
I've been trying to get OpenMPI working on two of the computers at a lab I help administer, and I'm running into a rather large issue. When running anything using mpirun as a normal user, I get the following output: $ mpirun --no-daemonize --host localhost,localhost,localhost,localhost,localhost

[OMPI users] Shared Ram used for simple application

2007-03-15 Thread Sebastien . HERRY
Hi, Is there any mean to reduce the shared RAM used by MPI? For a very simple application, I have about 500Mo of shared RAM. Thanks, Sébastien.

[OMPI users] portability of the executables compiled with OpenMPI

2007-03-15 Thread Michael
I'm having trouble with the portability of executables compiled with OpenMPI. I suspect the sysadms on the HPC system I'm using changed something because I think it worked previously. Situation: I'm compiling my code locally on a machine with just ethernet interfaces and OpenMPI 1.1.2 that

Re: [OMPI users] Orted freezes on launch of application

2007-03-15 Thread Ralph H Castain
I don¹t immediately see anything in your configuration that would cause the problem you describe. We haven¹t seen any problems running non-mpi apps ­ as I mentioned in another posting, we do it regularly, both threaded and non-threaded. My best guess is that there is something preventing openmpi fr

Re: [OMPI users] Fun with threading

2007-03-15 Thread Ralph H Castain
I can't speak to the MPI problems mentioned in here as my area of focus is solely on the RTE. With that caveat, I can say that - despite the fact there is little thread safety testing in the system - I haven't heard of any trouble launching non-MPI apps. We do it regularly, in both threaded and non

[OMPI users] HotI 2007 Call for Papers -- 3rd Call

2007-03-15 Thread Weikuan Yu
Apologies if you received multiple copies of this posting. Please feel free to distribute it to those who might be interested. Hot In