[OMPI users] MPI_Irecv segmentation fault

2009-09-21 Thread Everette Clemmer
Hey all, I'm getting a segmentation fault when I attempt to receive a single character via MPI_Irecv. Code follows: void recv_func() { if( !MASTER ) { charbuffer[ 1 ]; int flag;

Re: [OMPI users] Open-MPI between Mac and Linux (ubuntu 9.04) over wireless

2009-09-21 Thread Pallab Datta
The following is the error dump fuji:src pallabdatta$ /usr/local/bin/mpirun --mca btl_tcp_port_min_v4 36900 -mca btl_tcp_port_range_v4 32 --mca btl_base_verbose 30 --mca btl tcp,self --mca OMPI_mca_mpi_preconnect_all 1 -np 2 -hetero -H localhost,10.11.14.205 /tmp/hello [fuji.local:01316] mca:

[OMPI users] Open-MPI between Mac and Linux (ubuntu 9.04) over wireless

2009-09-21 Thread Pallab Datta
Hi I am trying to run open-mpi 1.3.3. between a linux box running ubuntu server v.9.04 and a Macintosh. I have configured openmpi with the following options.: ./configure --prefix=/usr/local/ --enable-heterogeneous --disable-shared --enable-static When both the machines are connected to the

Re: [OMPI users] Random hangs using btl sm with OpenMPI 1.3.2/1.3.3 + gcc4.4?

2009-09-21 Thread Jonathan Dursi
Continuing the conversation with myself: Google pointed me to Trac ticket #1944, which spoke of deadlocks in looped collective operations; there is no collective operation anywhere in this sample code, but trying one of the suggested workarounds/clues: that is, setting btl_sm_num_fifos to at

Re: [OMPI users] cartofile

2009-09-21 Thread Eugene Loh
Thank you, but I don't understand who is consuming this information for what.  E.g., the mpirun man page describes the carto file, but doesn't give users any indication whether they should be worrying about this. Lenny Verkhovsky wrote: Hi Eugene, carto file is a file with a staic

Re: [OMPI users] Random hangs using btl sm with OpenMPI 1.3.2/1.3.3 + gcc4.4?

2009-09-21 Thread Jonathan Dursi
I hate to repost, but I'm still stuck with the problem that, on a completely standard install with a standard gcc compiler, we're getting random hangs with a trivial test program when using the sm btl, and we still have no clues as to how to track down the problem. Using a completely standard

Re: [OMPI users] cartofile

2009-09-21 Thread Lenny Verkhovsky
Hi Eugene, carto file is a file with a staic graph topology of your node. in the opal/mca/carto/file/carto_file.h you can see example. ( yes I know that , it should be help/man list :) ) Basically it describes a map of your node and inside interconnection. Hopefully it will be discovered

Re: [OMPI users] Program hangs when run in the remote host ...

2009-09-21 Thread souvik bhattacherjee
As Ralph suggested, I *reversed the order of my PATH settings*: This is what I it shows: $ echo $PATH /usr/local/openmpi-1.3.3/bin/:/usr/bin:/bin:/usr/local/bin:/usr/X11R6/bin/:/usr/games:/usr/lib/qt4/bin:/usr/bin:/opt/kde3/bin $ echo $LD_LIBRARY_PATH /usr/local/openmpi-1.3.3/lib/ Moreover, I

Re: [OMPI users] running open mpi on ubuntu 9.04

2009-09-21 Thread Pavel Shamis (Pasha)
You will not be need the trick if you will configure Open Mpi with follow flag: --enable-mpirun-prefix-by-default Pasha. Hodgess, Erin wrote: the LD_LIBRARY_PATH did the trick; thanks so much! Sincerely, Erin Erin M. Hodgess, PhD Associate Professor Department of Computer and

Re: [OMPI users] Job fails after hours of running on a specific node

2009-09-21 Thread Pavel Shamis (Pasha)
Sangamesh, The ib tunings that you added to your command line only delay the problem but doesn't resolve it. The node-0-2.local gets asynchronous event "IBV_EVENT_PORT_ERROR" and as result the processes fails to deliver packets to some remote hosts and as result you see bunch of IB errors.

Re: [OMPI users] Question about OpenMPI performance vs. MVAPICH2

2009-09-21 Thread Brian Powell
Jed Brown wrote: Are you saying the output of mpicc/mpif90 -show has the same optimization flags? MPICH2 usually puts it's own optimization flags into the wrappers. Jed, thank you for your reply. Yes, mpif90 shows (other than differing libraries) identical flags. Ralph Castain wrote: Did