Re: [OMPI users] SYSTEM CPU with OpenMPI 1.4.3

2010-11-12 Thread tmishima
> Assumedly you're running your tests on otherwise-idle machines. Is the difference repeatable? Yes, I ran the test on other-nodes. The difference is noticeable and almost same. I'm planing to do more simple test to make the problem easier. Then, I'll send the results. Does this mailing list acc

Re: [OMPI users] Calling MPI_Test() too many times results in a time spike

2010-11-12 Thread Yiannis Papadopoulos
It is a quad core machine (Intel Core2 Quad CPU Q9550 - 64bit). OpenMPI is the one that comes with Fedora 13. I tested it on a cluster of Intel Xeon (32bit) with Gigabit Ethernet with OpenMPI 1.3.3, the results are: // with no timeout Total time: 1.00309 secs Estimated calls: 1116537 MPI_Test cal

Re: [OMPI users] memcpy overlap in ompi_ddt_copy_content_same_ddt and glibc 2.12

2010-11-12 Thread George Bosilca
I think I have a solution which solve both issues: - deal with the overlapping regions - maintain the level of today's performance Please try r24047. george. On Nov 11, 2010, at 06:46 , Jed Brown wrote: > On Thu, Nov 11, 2010 at 12:36, Number Cruncher > wrote: > However as commented here

[OMPI users] memory allocation - Fortran

2010-11-12 Thread Martin Siegert
Hi, section 4.11 http://www.mpi-forum.org/docs/mpi-20-html/node54.htm describes how memory allocation can be done in a Fortran program: REAL A POINTER (P, A(100,100)) ! no memory is allocated CALL MPI_ALLOC_MEM(4*100*100, MPI_INFO_NULL, P, IERR) ! memory is allocated ... A(3,5) = 2.71;

Re: [OMPI users] Compile problems with 1.3.2

2010-11-12 Thread Jeff Squyres
On Nov 10, 2010, at 4:37 PM, Jim Kusznir wrote: > (working command): > rpmbuild -bb --define 'install_in_opt 1' --define 'install_modulefile > 1' --define 'modules_rpm_name environment-modules' --define > 'build_all_in_one_rpm 0' --define 'configure_options > --with-tm=/opt/torque --enable-contrib

Re: [OMPI users] SYSTEM CPU with OpenMPI 1.4.3

2010-11-12 Thread Jeff Squyres
On Nov 10, 2010, at 12:31 AM, tmish...@jcity.maeda.co.jp wrote: > Recently I installed OpenMPI 1.4.3 on my cluster. I found that > SYSTEM CPU is higher than older versions of 1.4.X, when I ran > our FEM program. Further more, OMPI_1.4.3 is a little bit slower > than 1.4.2. What is the differnece b

Re: [OMPI users] Calling MPI_Test() too many times results in a time spike

2010-11-12 Thread Jeff Squyres
What kind of network did you do these tests on? Were both processes on the same machine or different machines? On Nov 10, 2010, at 12:29 AM, Yiannis Papadopoulos wrote: > Hello, > > I am using OpenMPI 1.4.1. I have a small test case that calls > MPI_Test() too many times. I see one or two rand

Re: [OMPI users] Deprecated parameter: plm_rsh_agent

2010-11-12 Thread Jeff Squyres
Ouch; bad FAQ maintainer! I've fixed it -- thanks for letting us know, Josh! On Nov 5, 2010, at 3:52 PM, Joshua Bernstein wrote: > Thanks Samuel, > > I should have checked ompi_info myself. > > The FAQ on the website should probably be updated to reflect this function > change. > > -Joshua

Re: [OMPI users] Infiniband error

2010-11-12 Thread Jeff Squyres
It would be best if an IB vendor replies (hint hint!), but it is likely that you have some kind of hardware issue on that node (e.g., a bad / flakey HCA, etc.). You should probably run a full set of layer-0 diagnostics on your fabric to make sure it's clean. I say this because back when Cisco

[OMPI users] Open MPI at SC'10

2010-11-12 Thread Jeff Squyres
Who's going to SC'10 this year? (/me raises hand) If you're there, be sure to drop by and say hello (I'll be in and around the Cisco Booth). Dr. George Bosilca (U. Tennessee Knoxville) and I will host our normal "Open MPI State of the Union" BOF on Wednesday at 12:15pm. It's a great place to