Re: [OMPI users] Building Open MPI with LSF

2013-05-07 Thread Ralph Castain
On May 7, 2013, at 10:30 AM, Paul Kapinos wrote: > On 05/07/13 17:55, Ralph Castain wrote: >>> >>> *1.* *OpenMPI support for 1.6 seems to be broken, and was fixed maybe in >>> 1.7?* >>> http://www.open-mpi.org/community/lists/users/2013/03/21640.php >> >> It is indeed fixed in 1.7 - we will l

[OMPI users] MPI for real time analysis

2013-05-07 Thread RoboBeans
Are people in community using MPI libraries in their application for real time processing / analytics? I have access to a cluster with infiniband and want to test millions of hypotheses and depending upon which one passed would run an aggregate function over them. I would like to achieve a subs

Re: [OMPI users] Building Open MPI with LSF

2013-05-07 Thread Paul Kapinos
On 05/07/13 17:55, Ralph Castain wrote: *1.* *OpenMPI support for 1.6 seems to be broken, and was fixed maybe in 1.7?* http://www.open-mpi.org/community/lists/users/2013/03/21640.php It is indeed fixed in 1.7 - we will look at backporting a fix to 1.6 well, we're using 1.6.4 with tight integ

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Ralph Castain
The FAQ assumes you realize that CIDR notation requires a value for the "x"... :-) On May 7, 2013, at 9:04 AM, Angel de Vicente wrote: > Hi, > > "Jeff Squyres (jsquyres)" writes: >> The list of names in the hostfile specifies the servers that will be used, >> not the network interfaces. Ha

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Jeff Squyres (jsquyres)
On May 7, 2013, at 12:04 PM, Angel de Vicente wrote: > But, the FAQ seems to be wrong, since it also says that I should be able > to run like: > > [angelv@comer RTI2D.Parallel]$ mpiexec -loadbalance --mca > btl_tcp_if_include 192.168.1.x/24 -prefix $OMPI_PREFIX -hostfile I think I meant the "x

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Angel de Vicente
Hi, "Jeff Squyres (jsquyres)" writes: > The list of names in the hostfile specifies the servers that will be used, > not the network interfaces. Have a look at the TCP portion of the FAQ: > > http://www.open-mpi.org/faq/?category=tcp Thanks a lot for this. Now it works OK if I run it lik

Re: [OMPI users] Building Open MPI with LSF

2013-05-07 Thread Ralph Castain
On May 7, 2013, at 7:09 AM, Andrey Rubshtein wrote: > Hi everyone, > > I want to install OpenMPI on LSF cluster in our organization. I am not > proficient with Linux/LSF, and some of my questions might be from lack of > understanding of the system, and not related to OpenMPI directly. > > So

Re: [OMPI users] Problems with building with VS 2010 and VS 2012

2013-05-07 Thread Ralph Castain
I'm afraid our Windows support person has moved on to greener pastures, and so we don't actually support it any more (in fact, the 1.7 version specifically removed the support code). Our friends in the cygwin world have a module that allows you to continue using OMPI on those systems - you migh

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Ralph Castain
Look at the MCA params btl_tcp_if_include and btl_tcp_if_exclude. Either include the internal network (to restrict to *only* using that one), or exclude the public one On May 7, 2013, at 8:25 AM, Angel de Vicente wrote: > Hi again, > > Angel de Vicente writes: >> yes, that's just what I did

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Jeff Squyres (jsquyres)
The list of names in the hostfile specifies the servers that will be used, not the network interfaces. Have a look at the TCP portion of the FAQ: http://www.open-mpi.org/faq/?category=tcp On May 7, 2013, at 11:25 AM, Angel de Vicente wrote: > Hi again, > > Angel de Vicente writes: >> y

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Angel de Vicente
Hi again, Angel de Vicente writes: > yes, that's just what I did with orted. I saw the port that it was > trying to connect and telnet to it, and I got "No route to host", so > that's why I was going the firewall path. Hopefully the sysadmins can > disable the firewall for the internal network to

[OMPI users] Problems with building with VS 2010 and VS 2012

2013-05-07 Thread Nenad Vujicic
Hello everyone, I'm having troubles with building OpenMPI v1.6.4 (actually all v1.6 and v1.7 versions) release sources (in both x86 and x64 modes) on Windows machine using VS 2010 and VS 2012 compilers and cmake v2.8.10.2. Just to note, I tried it with VS2008 too and it worked fine in x86 mode, bu

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Duke Nguyen
On 5/7/13 9:48 PM, Ralph Castain wrote: > > On May 7, 2013, at 7:39 AM, Duke Nguyen wrote: > >> >> >> No I didnt (and that maybe the reason, I am not really sure I was >> correct when installation these things). What I did was: >> >> $ cd /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Ralph Castain
On May 7, 2013, at 7:39 AM, Duke Nguyen wrote: > > > No I didnt (and that maybe the reason, I am not really sure I was > correct when installation these things). What I did was: > > $ cd /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163 > $ ./configure CC=/opt/intel/composer_xe_201

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Duke Nguyen
On 5/7/13 9:25 PM, Ralph Castain wrote: > Look at your ld-library-path. Breaking it down, you have the following > elements > > /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib $ export LD_LIBRARY_PATH= $ module load mpi/openmpi-1.7.2_composer_xe_2

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Duke Nguyen
On 5/7/13 9:07 PM, Ralph Castain wrote: > Is there a typo here? > > /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Ralph Castain
Look at your ld-library-path. Breaking it down, you have the following elements /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib repeated three times. Did you actually configure with --prefix=/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Duke Nguyen
On 5/7/13 8:10 PM, Jeff Squyres (jsquyres) wrote: > On May 7, 2013, at 7:36 AM, Duke Nguyen wrote: > >> So apparently openmpi 1.7.2 looks for the old library at >> /usr/loca/lib/openmpi for 1.6.3 instead of at >> /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi.

[OMPI users] Building Open MPI with LSF

2013-05-07 Thread Andrey Rubshtein
Hi everyone, I want to install OpenMPI on LSF cluster in our organization. I am not proficient with Linux/LSF, and some of my questions might be from lack of understanding of the system, and not related to OpenMPI directly. So far I found these bits of information on the site of OpenMPI *1.* *Op

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Ralph Castain
Is there a typo here? /opt/apps/abinit/abinit-7.2.1_composer_xe_2013.3.163_openmpi-1.7.2_intel_fftw3-mkl/usr/local/lib:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi:/opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib:/usr/local/lib:/opt/i

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Duke Nguyen
On 5/7/13 7:02 PM, Reuti wrote: > Hi, > > Am 07.05.2013 um 13:36 schrieb Duke Nguyen: > >> I am testing our cluster with module environment, and am having a >> headache to understand openmpi 1.7.2!!! So our system currently has >> openmpi 1.6.3 (at default location /usr/local), 1.6.4 and 1.7.2 co

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Jeff Squyres (jsquyres)
On May 7, 2013, at 7:36 AM, Duke Nguyen wrote: > So apparently openmpi 1.7.2 looks for the old library at > /usr/loca/lib/openmpi for 1.6.3 instead of at > /opt/apps/openmpi/openmpi-1.7.2r28341_composer_xe_2013.3.163/usr/local/lib/openmpi. > Is there away to force openmpi 1.7.2 look at > /opt/app

Re: [OMPI users] running openmpi with specified lib path

2013-05-07 Thread Reuti
Hi, Am 07.05.2013 um 13:36 schrieb Duke Nguyen: > I am testing our cluster with module environment, and am having a > headache to understand openmpi 1.7.2!!! So our system currently has > openmpi 1.6.3 (at default location /usr/local), 1.6.4 and 1.7.2 compiled > with intel compilers (installed at

[OMPI users] running openmpi with specified lib path

2013-05-07 Thread Duke Nguyen
Hi folks, I am testing our cluster with module environment, and am having a headache to understand openmpi 1.7.2!!! So our system currently has openmpi 1.6.3 (at default location /usr/local), 1.6.4 and 1.7.2 compiled with intel compilers (installed at /opt/apps). In order to use openmpi 1.7.2 for

Re: [OMPI users] Help diagnosing problem: not being able to run MPI code across computers

2013-05-07 Thread Angel de Vicente
Hi, "Jeff Squyres (jsquyres)" writes: >>> I'm starting to think that perhaps is a firewall issue? I don't have >>> root access in these machines but I'll try to investigate. > A simple test is to try any socket-based server app between the two > machines that opens a random listening socket. Tr