[OMPI users] Open MPI installation problem
Hi All, I try to install Open MPI, which is prerequiste for liggghts (DEM software). Some info about my current linux version : NAME="SLED" VERSION="12-SP3" VERSION_ID="12.3" PRETTY_NAME="SUSE Linux Enterprise Desktop 12 SP3" ID="sled" I installed Open MPI 1.6 by typing ./configure --prefix=$HOME/openmpi make all make install Here, it is discussed that openmpi 1.6 is compatible with OpenSuse 12.3 https://public.kitware.com/pipermail/paraview/2014-February/030487.html https://build.opensuse.org/package/show/openSUSE:12.3/openmpi To add OpenMPI to my path and LD_LIBRARY_PATH, I execute the following comands on terminal: export PATH=$PATH:/usr/lib64/mpi/gcc/openmpi/bin export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/mpi/gcc/openmpi/lib64 Then, in /liggghts/src directory, I execute make auto, this appears : Creating list of contact models completed. make[1]: Entering directory '/home/serdarhd/liggghts/LIGGGHTS-PUBLIC/src/Obj_auto' Makefile:456: *** 'Could not compile a simple MPI example. Test was done with MPI_INC="" and MPICXX="mpicxx"'. Stop. make[1]: Leaving directory '/home/serdarhd/liggghts/LIGGGHTS-PUBLIC/src/Obj_auto' Makefile:106: recipe for target 'auto' failed make: *** [auto] Error 2 Do you have any idea what the problem is here ? I went through the "makefile" but it looks like quite complicated as linux beginner like me. Thanks in advance. Regards, Serdar ___ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
Re: [OMPI users] Open MPI installation problem
Thanks Ralph. It worked. Serdar Ralph H Castain , 23 Oca 2019 Çar, 15:48 tarihinde şunu yazdı: > Your PATH and LD_LIBRARY_PATH setting is incorrect. You installed OMPI > into $HOME/openmpi, so you should have done: > > PATH=$HOME/openmpi/bin:$PATH > LD_LIBRARY_PATH=$HOME/openmpi/lib:$LD_LIBRARY_PATH > > Ralph > > > On Jan 23, 2019, at 6:36 AM, Serdar Hiçdurmaz > wrote: > > Hi All, > > I try to install Open MPI, which is prerequiste for liggghts (DEM > software). Some info about my current linux version : > > NAME="SLED" > VERSION="12-SP3" > VERSION_ID="12.3" > PRETTY_NAME="SUSE Linux Enterprise Desktop 12 SP3" > ID="sled" > > I installed Open MPI 1.6 by typing > > ./configure --prefix=$HOME/openmpi > make all > make install > > Here, it is discussed that openmpi 1.6 is compatible with OpenSuse 12.3 > https://public.kitware.com/pipermail/paraview/2014-February/030487.html > https://build.opensuse.org/package/show/openSUSE:12.3/openmpi > > To add OpenMPI to my path and LD_LIBRARY_PATH, I execute the following > comands on terminal: > > export PATH=$PATH:/usr/lib64/mpi/gcc/openmpi/bin > export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/mpi/gcc/openmpi/lib64 > > Then, in /liggghts/src directory, I execute make auto, this appears : > > Creating list of contact models completed. > make[1]: Entering directory > '/home/serdarhd/liggghts/LIGGGHTS-PUBLIC/src/Obj_auto' > Makefile:456: *** 'Could not compile a simple MPI example. Test was done > with MPI_INC="" and MPICXX="mpicxx"'. Stop. > make[1]: Leaving directory > '/home/serdarhd/liggghts/LIGGGHTS-PUBLIC/src/Obj_auto' > Makefile:106: recipe for target 'auto' failed > make: *** [auto] Error 2 > > Do you have any idea what the problem is here ? I went through the > "makefile" but it looks like quite complicated as linux beginner like me. > > Thanks in advance. Regards, > > Serdar > > ___ > users mailing list > users@lists.open-mpi.org > https://lists.open-mpi.org/mailman/listinfo/users > > > ___ > users mailing list > users@lists.open-mpi.org > https://lists.open-mpi.org/mailman/listinfo/users ___ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
Re: [OMPI users] Open MPI installation problem
Hi folks, After installing OpenMPI, I executed these lines echo 'PATH=$HOME/openmpi/bin:$PATH' >> ~/.bashrc echo 'LD_LIBRARY_PATH=$HOME/openmpi/' >> ~/.bashrc source. bashrc and run a simple file by using mpirun np 1 helloworld The error message is helloworld: error while loading shared libraries: libmpi_cxx.so.1: cannot open shared object file: No such file or directory -- mpirun noticed that the job aborted, but has no info as to the process that caused that situation. -- It is about inaccurate linking the libraries but I could not fix it. When i run ldd helloworld, this appears linux-vdso.so.1 (0x7fff8f2d2000) libmpi_cxx.so.1 => not found libmpi.so.1 => not found libm.so.6 => /lib64/libm.so.6 (0x7fbc21e55000) libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x7fbc21acb000) libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x7fbc218b3000) libpthread.so.0 => /lib64/libpthread.so.0 (0x7fbc21696000) libc.so.6 => /lib64/libc.so.6 (0x7fbc212f1000) /lib64/ld-linux-x86-64.so.2 (0x7fbc22152000) Do you have any idea to fix it ? Best, Serdar Serdar Hiçdurmaz , 23 Oca 2019 Çar, 16:26 tarihinde şunu yazdı: > Thanks Ralph. It worked. > > Serdar > > Ralph H Castain , 23 Oca 2019 Çar, 15:48 tarihinde şunu > yazdı: > >> Your PATH and LD_LIBRARY_PATH setting is incorrect. You installed OMPI >> into $HOME/openmpi, so you should have done: >> >> PATH=$HOME/openmpi/bin:$PATH >> LD_LIBRARY_PATH=$HOME/openmpi/lib:$LD_LIBRARY_PATH >> >> Ralph >> >> >> On Jan 23, 2019, at 6:36 AM, Serdar Hiçdurmaz >> wrote: >> >> Hi All, >> >> I try to install Open MPI, which is prerequiste for liggghts (DEM >> software). Some info about my current linux version : >> >> NAME="SLED" >> VERSION="12-SP3" >> VERSION_ID="12.3" >> PRETTY_NAME="SUSE Linux Enterprise Desktop 12 SP3" >> ID="sled" >> >> I installed Open MPI 1.6 by typing >> >> ./configure --prefix=$HOME/openmpi >> make all >> make install >> >> Here, it is discussed that openmpi 1.6 is compatible with OpenSuse 12.3 >> https://public.kitware.com/pipermail/paraview/2014-February/030487.html >> https://build.opensuse.org/package/show/openSUSE:12.3/openmpi >> >> To add OpenMPI to my path and LD_LIBRARY_PATH, I execute the following >> comands on terminal: >> >> export PATH=$PATH:/usr/lib64/mpi/gcc/openmpi/bin >> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/mpi/gcc/openmpi/lib64 >> >> Then, in /liggghts/src directory, I execute make auto, this appears : >> >> Creating list of contact models completed. >> make[1]: Entering directory >> '/home/serdarhd/liggghts/LIGGGHTS-PUBLIC/src/Obj_auto' >> Makefile:456: *** 'Could not compile a simple MPI example. Test was done >> with MPI_INC="" and MPICXX="mpicxx"'. Stop. >> make[1]: Leaving directory >> '/home/serdarhd/liggghts/LIGGGHTS-PUBLIC/src/Obj_auto' >> Makefile:106: recipe for target 'auto' failed >> make: *** [auto] Error 2 >> >> Do you have any idea what the problem is here ? I went through the >> "makefile" but it looks like quite complicated as linux beginner like me. >> >> Thanks in advance. Regards, >> >> Serdar >> >> ___ >> users mailing list >> users@lists.open-mpi.org >> https://lists.open-mpi.org/mailman/listinfo/users >> >> >> ___ >> users mailing list >> users@lists.open-mpi.org >> https://lists.open-mpi.org/mailman/listinfo/users > > ___ users mailing list users@lists.open-mpi.org https://lists.open-mpi.org/mailman/listinfo/users
