little investigation today and file
>> a bug. I'll make sure you're CC'ed on the bug ticket.
>>
>>
>>
>> On Aug 12, 2014, at 12:27 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>
>>> I don't have this error in OMPI 1.9a1r32252 and OMPI 1.8.1 (wit
ell.
>>
>>
>>On Wed, Aug 20, 2014 at 8:06 PM, Ralph Castain < r...@open-mpi.org > wrote:
>>>It was not yet fixed - but should be now.
>>>
>>>On Aug 20, 2014, at 6:39 AM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>>>Hello!
>
Castain <r...@open-mpi.org>:
>Not sure I understand. The problem has been fixed in both the trunk and the
>1.8 branch now, so you should be able to work with either of those nightly
>builds.
>
>On Aug 21, 2014, at 12:02 AM, Timur Ismagilov < tismagi...@mail.ru > wrote:
is ";" . You can change delimiter with
>>mca_base_env_list_delimiter.
>>
>>
>>
>>On Fri, Aug 22, 2014 at 2:59 PM, Timur Ismagilov < tismagi...@mail.ru >
>>wrote:
>>>Hello!
>>>If i use latest night snapshot:
>>>
ve the time it
>takes Slurm to launch our daemon on the remote host, so you get about half of
>a second.
>
>IIRC, you were having some problems with the OOB setup. If you specify the TCP
>interface to use, does your time come down?
>
>
>On Aug 26, 2014, at 8:32 AM, Timur
bose 100"
>to your cmd line
>
>On Aug 27, 2014, at 4:31 AM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>When i try to specify oob with --mca oob_tcp_if_include >from ifconfig>, i alwase get err
0m4.166s
user 0m0.034s
sys 0m0.079s
Thu, 28 Aug 2014 13:10:02 +0400 от Timur Ismagilov <tismagi...@mail.ru>:
>I enclosure 2 files with output of two foloowing commands (OMPI 1.9a1r32570)
>$time mpirun --leave-session-attached -mca oob_base_verbose 100 -np 1
>./hello_c >& out1.
Hello!
What param can i tune to increase perfomance(scalability) for my app (all to
all pattern with message size = constant/nnodes)?
I can read this faq for mpi, but is it correct for shmem?
I have 2 programm doing the same thing(with same input) each node send
messages(message size =
Hello!
Why does shmalloc return NULL when I try to allocate 512MB.
When i thry to allocate 256mb - all fine.
I use Open MPI/SHMEM v1.8.4 rc1 (v1.8.3-202-gb568b6e).
programm:
#include
#include
int main(int argc, char **argv)
{
int *src;
start_pes(0);
int length = 1024*1024*512;
src = (int*)
Hello!
I use ompi-v1.8.4 from hpcx-v1.3.0-327-icc-OFED-1.5.3-redhat6.2;
OFED-1.5.4.1;
CentOS release 6.2;
infiniband 4x FDR
I have two problems:
1. I can not use mxm :
1.a) $mpirun --mca pml cm --mca mtl mxm -host node5,node14,node28,node29 -mca
plm_rsh_no_tree_spawn 1 -np 4 ./hello
2015, 9:04 -07:00 от Ralph Castain <r...@open-mpi.org>:
>I can’t speak to the mxm problem, but the no-tree-spawn issue indicates that
>you don’t have password-less ssh authorized between the compute nodes
>
>
>>On May 25, 2015, at 8:55 AM, Timur Ismagilov < tismagi.
_PATH,PATH, LD_PRELOAD and OPAL_PREFIX that it is pointing to the
>right mpirun?
>
>Also, could you please check that yalla is present in the ompi_info -l 9
>output?
>
>Thanks
>
>On Mon, May 25, 2015 at 7:11 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>I can
lease select export MXM_IB_PORTS=mlx4_0:1 explicitly and retry
>
>On Mon, May 25, 2015 at 8:26 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>Hi, Mike,
>>that is what i have:
>>$ echo $LD_LIBRARY_PATH | tr ":" "\n"
>>/gpfs/NETHOME/oivt1
:53 +03:00 от Mike Dubman <mi...@dev.mellanox.co.il>:
>Hi Timur,
>
>Here it goes:
>
>wget
>ftp://bgate.mellanox.com/hpc/hpcx/custom/v1.3/hpcx-v1.3.330-icc-OFED-1.5.4.1-redhat6.2-x86_64.tbz
>
>Please let me know if it works for you and will add 1.5.4.1 mofed to the
>
t; -mca plm_base_verbose 5 -mca oob_base_verbose 10 -mca rml_base_verbose 10
>--debug-daemons
>
>On Tue, May 26, 2015 at 11:38 AM, Timur Ismagilov < tismagi...@mail.ru >
>wrote:
>>1. mxm_perf_test - OK.
>>2. no_tree_spawn - OK.
>>3. ompi yalla and "--mca pml c
t;>Alina - could you please take a look?
>>Thx
>>
>>
>>-- Forwarded message --
>>From: Timur Ismagilov < tismagi...@mail.ru >
>>Date: Tue, May 26, 2015 at 12:40 PM
>>Subject: Re[12]: [OMPI users] MXM problem
>>To: Open MPI Users < u
>
>On Thu, May 28, 2015 at 10:21 AM, Timur Ismagilov < tismagi...@mail.ru >
>wrote:
>>I'm sorry for the delay .
>>
>>Here it is:
>>( I used 5 min time limit )
>>/gpfs/NETHOME/oivt1/nicevt/itf/sources/hpcx-v1.3.330-icc-OFED-1.5.4.1-redhat6.2-x86_64/
lgorithm.
>
>To see benefit of yalla - you should run p2p benchmarks (osu_lat/bw/bibw/mr)
>
>
>On Thu, May 28, 2015 at 7:35 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>I compare ompi-1.8.5 (hpcx-1.3.3-icc) with impi v 4.1.4.
>>
>>I build ompi with MX
a and without hcoll?
>
>Thanks,
>Alina.
>
>
>
>On Tue, Jun 2, 2015 at 4:56 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>Hi, Mike!
>>I have impi v 4.1.2 (- impi)
>>I build ompi 1.8.5 with MXM and hcoll (- ompi_yalla)
>>I build ompi 1.8.
ults?
>
>2. add the following to the command line that you are running with 'pml yalla'
>and attach the results?
>"-x MXM_TLS=self,shm,rc"
>
>3. run your command line with yalla and without hcoll?
>
>Thanks,
>Alina.
>
>
>
>On Tue, Jun 2, 2015 at 4:56
t;
>1. --map-by node --bind-to socket
>2. --map-by node --bind-to core
>
>Please attach your results.
>
>Thank you,
>Alina.
>
>On Thu, Jun 4, 2015 at 6:53 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>Hello, Alina.
>>1. Here is my
>>o
ase try running your ompi_yalla cmd with ' --bind-to socket'
>(instead of binding to core) and check if it affects the results?
>We saw that it made a difference on the performance in our lab so that's why I
>asked you to try the same.
>
>Thanks,
>Alina.
>
>On Tue, J
ina Sklarevich
<ali...@dev.mellanox.co.il>:
>Hi Timur,
>
>Can you please tell me which osu version you are using?
>Unless it is from HPCX, please attach the source file of osu_mbw_mr.c you are
>using.
>
>Thank you,
>Alina.
>
>On Tue, Jun 16, 2015 at 7:10 PM, Timur I
Hello!
I am using Open MPI v1.8.1.
$oshmem_info -a --parsable | grep spml_ikrit_np
mca:spml:ikrit:param:spml_ikrit_np:value:1620524368 (alwase new value)
mca:spml:ikrit:param:spml_ikrit_np:source:default
mca:spml:ikrit:param:spml_ikrit_np:status:writeable
is is
>some interaction with sbatch, but I'll take a look. I haven't see that
>warning. Mike indicated he thought it is due to both slurm and OMPI trying to
>control stdin/stdout, in which case it shouldn't be happening but you can
>safely ignore it
>
>
>On Jun 5, 2014, at 3:
Hello!
I am using Open MPI v1.8.1 in
example program hello_oshmem.cpp.
When I put spml_ikrit_np = 1000 (more than 4) and run task on 4 (2,1) nodes, I
get an:
in out file:
No available spml components were found!
This means that there are no components of this type installed on your
system or
Hello!
I have open mpi 1.9a1r32104 and open mpi 1.5.5.
I have much better perfomance in open mpi 1.5.5 with openMP on 8 cores
in the program:
#define N 1000
int main(int argc, char *argv[]) {
...
MPI_Init(, );
...
for (i = 0; i < N; i++) {
a[i] = i * 1.0;
b[i] =
s an interactive job and use top itself, is there?
>
>As for that sbgp warning - you can probably just ignore it. Not sure why that
>is failing, but it just means that component will disqualify itself. If you
>want to eliminate it, just add
>
>-mca sbgp ^ibnet
>
>to your cmd line
>
>
>
n of OMPI. Please check
>your LD_LIBRARY_PATH and ensure that the 1.9 installation is at the *front* of
>that list.
>
>Of course, I'm also assuming that you installed the two versions into
>different locations - yes?
>
>Also, add "--mca rmaps_base_verbose 20" to your cmd line -
s? I
>suspect I know the problem, but need to see the actual cmd line to confirm it
>
>Thanks
>Ralph
>
>On Jul 4, 2014, at 1:38 AM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>There is only one path to mpi lib.
>>echo $LD_LIBRARY_PATH
>>/opt/int
Hello!
I have Open MPI v1.9a1r32142 and slurm 2.5.6.
I can not use mpirun after salloc:
$salloc -N2 --exclusive -p test -J ompi
$LD_PRELOAD=/mnt/data/users/dm2/vol3/semenov/_scratch/mxm/mxm-3.0/lib/libmxm.so
mpirun -np 1 hello_c
uot; and attach output.
>Thx
>
>
>On Wed, Jul 16, 2014 at 11:12 AM, Timur Ismagilov < tismagi...@mail.ru >
>wrote:
>>Hello!
>>I have Open MPI v1.9a1r32142 and slurm 2.5.6.
>>
>>I can not use mpirun after salloc:
>>
>>$salloc -N2 --exclusive
Thu, 17 Jul 2014 11:40:24 +0300 от Mike Dubman <mi...@dev.mellanox.co.il>:
>can you use latest ompi-1.8 from svn/git?
>Ralph - could you please suggest.
>Thx
>
>
>On Wed, Jul 16, 2014 at 2:48 PM, Timur Ismagilov < tismagi...@mail.ru > wrote:
>>Here it is:
>>
I have the same problem in openmpi 1.8.1( Apr 23, 2014 ).
Does the srun command have a --map-by mpirun parameter, or can i chage it
from bash enviroment?
Пересылаемое сообщение
От кого: Timur Ismagilov <tismagi...@mail.ru>
Кому: Mike Dubman <mi...@dev.mellanox.co.
Пересылаемое сообщение
От кого: Timur Ismagilov <tismagi...@mail.ru>
Кому: Ralph Castain <r...@open-mpi.org>
Дата: Sun, 20 Jul 2014 21:58:41 +0400
Тема: Re[2]: [OMPI users] Fwd: Re[4]: Salloc and mpirun problem
Here it is:
$ salloc -N2 --exclusive -p test -J
ubnet - this
>is generally a bad idea. I also saw that the last one in the list shows up
>twice in the kernel array - not sure why, but is there something special about
>that NIC?
>
>What do the NICs look like on the remote hosts?
>
>On Jul 20, 2014, at 10:59 AM, Timur Ismagilov
:17849] mca: base: close: component oob closed
>>[node1-128-18:17849] mca: base: close: unloading component oob
>>[node1-128-18:17849] [[65177,0],2] TCP SHUTDOWN
>>[node1-128-18:17849] [[65177,0],2] RELEASING PEER OBJ [[65177,0],0]
>>[node1-128-18:17849] [[65177,0],2] CLOSING
Hello!
I have Open MPI v1.8.2rc4r32485
When i run hello_c, I got this error message
$mpirun -np 2 hello_c
An ORTE daemon has unexpectedly failed after launch and before
communicating back to mpirun. This could be caused by a number
of factors, including an inability to create a connection
base: close: component oob closed
[compiler-2:08792] mca: base: close: unloading component oob
[compiler-2:08792] [[42190,0],0] TCP SHUTDOWN
[compiler-2:08792] mca: base: close: component tcp closed
[compiler-2:08792] mca: base: close: unloading component tcp
Tue, 12 Aug 2014 16:14:58 +0400 от Timu
Hello!
I use Open MPI v1.9a132520.
Can I use hybrid mpi+openshmem?
Where can i read about?
I have some problems in simple programm:
#include
#include "shmem.h"
#include "mpi.h"
int main(int argc, char* argv[])
{
int proc, nproc;
int rank, size, len;
char
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