Re: [OMPI users] mpi problems,

2011-04-07 Thread Nehemiah Dacres
t; of the Makefile set CC and LINKER to mpicc. You may need to also change the > CFLAGS and LINKERFLAGS variables to match which compiler/arch you are > using. > > --td > > On 04/07/2011 06:20 AM, Terry Dontje wrote: > > On 04/06/2011 03:38 PM, Nehemiah Dacres wrote: > >

Re: [OMPI users] mpi problems,

2011-04-06 Thread Nehemiah Dacres
, 2011 at 2:44 PM, Ralph Castain <r...@open-mpi.org> wrote: > Look at your output from mpicc --showme. It indicates that the OMPI libs > were put in the lib64 directory, not lib. > > > On Apr 6, 2011, at 1:38 PM, Nehemiah Dacres wrote: > > I am also trying to get netlib's

Re: [OMPI users] mpi problems,

2011-04-06 Thread Nehemiah Dacres
over IB to be that > dramatically lower performing. > > --td > > > > On 04/06/2011 12:40 PM, Nehemiah Dacres wrote: > > also, I'm not sure if I'm reading the results right. According to the last > run, did using the sun compilers (update 1 ) result in higher performance &

Re: [OMPI users] mpi problems,

2011-04-06 Thread Nehemiah Dacres
also, I'm not sure if I'm reading the results right. According to the last run, did using the sun compilers (update 1 ) result in higher performance with sunct? On Wed, Apr 6, 2011 at 11:38 AM, Nehemiah Dacres <dacre...@slu.edu> wrote: > some tests I did. I hope this isn't an abuse of

Re: [OMPI users] mpi problems,

2011-04-06 Thread Nehemiah Dacres
some tests I did. I hope this isn't an abuse of the list. please tell me if it is but thanks to all those who helped me. this goes to say that the sun MPI works with programs not compiled with sun’s compilers. this first test was run as a base case to see if MPI works., the sedcond run is to see

Re: [OMPI users] mpi problems,

2011-04-06 Thread Nehemiah Dacres
On Mon, Apr 4, 2011 at 7:35 PM, Terry Dontje wrote: > libfui.so is a library a part of the Solaris Studio FORTRAN tools. It > should be located under lib from where your Solaris Studio compilers are > installed from. So one question is whether you actually have Studio

Re: [OMPI users] mpi problems,

2011-04-06 Thread Nehemiah Dacres
> > Well, where is libfui located? Is that location in your ld path? Is the lib > present on all nodes in your hostfile? > > > On Apr 4, 2011, at 1:58 PM, Nehemiah Dacres wrote: > > [jian@therock ~]$ echo $LD_LIBRARY_PATH > > /opt/sun/sunstudio12.1/lib:/opt/vtk/lib:/opt/grid

Re: [OMPI users] mpi problems,

2011-04-04 Thread Nehemiah Dacres
t; export > LD_LIBRARY_PATH=/compiler/prefix/lib:/ompi/prefix/lib:$LD_LIBRARY_PATH > > -- > Samuel K. Gutierrez > Los Alamos National Laboratory > > > On Apr 4, 2011, at 1:33 PM, Nehemiah Dacres wrote: > > altering LD_LIBRARY_PATH alter's the process's path to mpi's l

Re: [OMPI users] mpi problems,

2011-04-04 Thread Nehemiah Dacres
altering LD_LIBRARY_PATH alter's the process's path to mpi's libraries, how do i alter its path to compiler libs like libfui.so.1? it needs to find them cause it was compiled by a sun compiler On Mon, Apr 4, 2011 at 10:06 AM, Nehemiah Dacres <dacre...@slu.edu> wrote: > > As Ral

Re: [OMPI users] mpi problems,

2011-04-04 Thread Nehemiah Dacres
2.1c/sun/bin/orted > end > > that's what the tentakel line was refering to, or ... > > On Apr 4, 2011, at 10:24 AM, Nehemiah Dacres wrote: > > > I have installed it via a symlink on all of the nodes, I can go 'tentakel > which mpirun ' and it finds it' I'll check the library pa

Re: [OMPI users] mpi problems,

2011-04-04 Thread Nehemiah Dacres
ght try (csh style): > > foreach host (`cat list`) >echo $host >ls -l /opt/SUNWhpc/HPC8.2.1c/sun/bin/orted > end > > > > On Apr 4, 2011, at 10:24 AM, Nehemiah Dacres wrote: > > > I have installed it via a symlink on all of the nodes, I can go 'tentakel > whi

Re: [OMPI users] mpi problems,

2011-04-04 Thread Nehemiah Dacres
node name to the error message - should have been > there before now. > > If it is a debug build, you can add "-mca plm_base_verbose 1" to the cmd > line and get output tracing the launch and showing you what nodes are having > problems. > > > On Apr 4, 2011, at 8:24 AM,

Re: [OMPI users] mpi problems,

2011-04-04 Thread Nehemiah Dacres
The error message seems to imply that you don't have OMPI installed on all > your nodes (because it didn't find /opt/SUNWhpc/HPC8.2.1c/sun/bin/orted on a > remote node). > > > On Mar 30, 2011, at 4:24 PM, Nehemiah Dacres wrote: > > > I am trying to figure out why my jobs ar

[OMPI users] mpi problems,

2011-03-30 Thread Nehemiah Dacres
I am trying to figure out why my jobs aren't getting distributed and need some help. I have an install of sun cluster tools on Rockscluster 5.2 (essentially centos4u2). this user's account has its home dir shared via nfs. I am getting some strange errors. here's an example run [jian@therock ~]$

Re: [OMPI users] [Rocks-Discuss] compiling Openmpi on solaris studio express

2010-11-29 Thread Nehemiah Dacres
. Then, redo your configure but you do > not need to do anything > with LDFLAGS. Just use your original flags. I think this should work, but > I am only reading > what is in the ticket. > > Rolf > > > > On 11/29/10 16:26, Nehemiah Dacres wrote: > > that loo

Re: [OMPI users] [Rocks-Discuss] compiling Openmpi on solaris studio express

2010-11-29 Thread Nehemiah Dacres
I believe the user specifically wishes to use the special debugging tools in Solaris Studio. The flag in question seems to be -rpath according to the logs, It would be suspicious if this was a flag for the Solaris linker. I don't have access to any solaris machines but I may try make a virtual

Re: [OMPI users] [Rocks-Discuss] compiling Openmpi on solaris studio express

2010-11-29 Thread Nehemiah Dacres
it NOT to do. On Mon, Nov 29, 2010 at 3:26 PM, Nehemiah Dacres <dacre...@slu.edu> wrote: > that looks about right. So the suggestion: > > ./configure LDFLAGS="-notpath ... ... ..." > > -notpath should be replaced by whatever the proper flag should be, in my case > -L ?

Re: [OMPI users] [Rocks-Discuss] compiling Openmpi on solaris studio express

2010-11-29 Thread Nehemiah Dacres
You may be able to override it's value on the configure > command-line, which is usually easiest/best: > > ./configure LDFLAGS="-notpath ... ... ..." > > -- > Prentice > > > Nehemiah Dacres wrote: > > > it may have been that I didn't set ld_library_path &

Re: [OMPI users] [Rocks-Discuss] compiling Openmpi on solaris studio express

2010-11-29 Thread Nehemiah Dacres
am I doing this wrong? are any of those configure flags unnecessary or inappropriate On Mon, Nov 29, 2010 at 2:06 PM, Gus Correa <g...@ldeo.columbia.edu> wrote: > Nehemiah Dacres wrote: > >> I want to compile openmpi to work with the solaris studio express

[OMPI users] compiling Openmpi on solaris studio express

2010-11-29 Thread Nehemiah Dacres
I want to compile openmpi to work with the solaris studio express or solaris studio. This is a different version than is installed on rockscluster 5.2 and would like to know if there any gotchas or configure flags I should use to get it working or portable to nodes on the cluster. Software-wise,

[OMPI users] sun compilers

2010-11-19 Thread Nehemiah Dacres
is there a searchable archive of this mailing list? I am helping someone use Openmpi with Sun's compilers that came with SolarisStudio. I used the --showme with mpif90 and got this gfortran -I/opt/openmpi/include -pthread -I/opt/openmpi/lib ring_f90.f90 -L/opt/openmpi/lib -lmpi_f90 -lmpi_f77