Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-09 Thread Jing Gong via users
rs on behalf of Ralph Castain via users Sent: Thursday, August 8, 2019 16:41 To: Open MPI Users Cc: Ralph Castain Subject: Re: [OMPI users] OMPI was not built with SLURM's PMI support Did you configure Slurm to use PMIx? If so, then you simply need to set the "--mpi=pmix" or "--mpi=

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-09 Thread Jing Gong via users
; Open MPI Users Subject: Re: [OMPI users] OMPI was not built with SLURM's PMI support Hi Ralph, > Remove the extra configure options from OMPI - you don't need to tell it > --with-pmix or --with-slurm. It will "do the right thing" without that stuff. Yes, "mpirun" work

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-09 Thread Ralph Castain via users
lph Castain via users mailto:users@lists.open-mpi.org> > Sent: Thursday, August 8, 2019 16:41 To: Open MPI Users Cc: Ralph Castain Subject: Re: [OMPI users] OMPI was not built with SLURM's PMI support  Did you configure Slurm to use PMIx? If so, then you simply need to set the "--mpi=pmix&q

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-09 Thread Ralph Castain via users
srun: pmix srun: pmix_v1 I have tested srun --mpi=pmi2/pmix/pmix_v1 but no one successful ran. Thanks. /Jing From: Ralph Castain mailto:r...@open-mpi.org> > Sent: Thursday, August 8, 2019 21:01 To: Jing Gong Subject: Re: [OMPI users] OMPI was not built wi

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-09 Thread Jing Gong via users
built with SLURM's PMI support ..." is back if using "srun" Thanks. /Jing From: Ralph Castain Sent: Thursday, August 8, 2019 19:59 To: Jing Gong Cc: Open MPI Users Subject: Re: [OMPI users] OMPI was not built with SLURM's PMI support Remove the extr

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-09 Thread Artem Polyakov via users
. In the "run.sh" replace "mpirun" with corresponding srun command: "srun -n $np `pwd`/pmix_intra_perf $@" From: Ralph Castain Sent: Thursday, August 8, 2019 1:59 PM To: Jing Gong Cc: Open MPI Users ; Artem Polyakov Subject: Re: [OMPI users] OMPI was not built with SLURM's PM

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-08 Thread Jing Gong via users
mpiled with flag --with-pmix. Thanks. /Jing From: Gilles GOUAILLARDET Sent: Thursday, August 8, 2019 16:41 To: Open MPI Users Cc: Jing Gong Subject: Re: [OMPI users] OMPI was not built with SLURM's PMI support Hi, You need to configure --with-pmi ...

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-08 Thread Ralph Castain via users
Did you configure Slurm to use PMIx? If so, then you simply need to set the "--mpi=pmix" or "--mpi=pmix_v2" (depending on which version of PMIx you used) flag on your srun cmd line so it knows to use it. If not (and you can't fix it), then you have to explicitly configure OMPI to use Slurm's

Re: [OMPI users] OMPI was not built with SLURM's PMI support

2019-08-08 Thread Gilles GOUAILLARDET via users
Hi, You need to configure --with-pmi ... Cheers, Gilles On August 8, 2019, at 11:28 PM, Jing Gong via users wrote: Hi, Recently our Slurm system has been upgraded to 19.0.5. I tried to recompile openmpi v3.0 due to the bug reported in https://bugs.schedmd.com/show_bug.cgi?id=6993

[OMPI users] OMPI was not built with SLURM's PMI support

2019-08-08 Thread Jing Gong via users
Hi, Recently our Slurm system has been upgraded to 19.0.5. I tried to recompile openmpi v3.0 due to the bug reported in https://bugs.schedmd.com/show_bug.cgi?id=6993 The configure flags are: $./configure --enable-shared --enable-static --with-slurm --with-pmix and the output of