Re: [OMPI users] Segmentation fault on OMPI 1.6.5 built with gcc 4.4.7 and PGI pgfortran 11.10

2013-12-24 Thread Jeff Hammond
Try pure PGI and pure GCC builds. If only the mixed one fails, then I saw a problem like this in MPICH a few months ago. It appears PGI does not play nice with GCC regarding the C standard library functions. Or at least that's what I concluded. The issue remains unresolved. Jeff Sent from my

Re: [OMPI users] Segmentation fault on OMPI 1.6.5 built with gcc 4.4.7 and PGI pgfortran 11.10

2013-12-24 Thread Jeff Squyres (jsquyres)
I'm *very loosely* checking email. :-) Agree with what Ralph said: it looks like your program called memalign, and that ended up segv'ing. That could be an OMPI problem, or it could be an application problem. Try also configuring OMPI --with-valgrind and running your app through a memory-che

Re: [OMPI users] Segmentation fault on OMPI 1.6.5 built with gcc 4.4.7 and PGI pgfortran 11.10

2013-12-23 Thread Ralph Castain
I fear that Jeff and Brian are both out for the holiday, Gus, so we are unlikely to have much info on this until they return I'm unaware of any such problems in 1.6.5. It looks like something isn't properly aligned in memory - could be an error on our part, but might be in the program. You migh

[OMPI users] Segmentation fault on OMPI 1.6.5 built with gcc 4.4.7 and PGI pgfortran 11.10

2013-12-23 Thread Gus Correa
Dear OMPI experts I have been using OMPI 1.6.5 built with gcc 4.4.7 and PGI pgfortran 11.10 to successfully compile and run a large climate modeling program (CESM) in several different configurations. However, today I hit a segmentation fault when running a new model configuration. [In the cli