[Pw_forum] error of Gipaw calculation for ethonal

2013-05-08 Thread Yong Xue
S7N 5E2 Canada Tel: +1 306 261 2369 -- next part -- An HTML attachment was scrubbed... URL: http://pwscf.org/pipermail/pw_forum/attachments/20130508/b4a7568e/attachment.html

[Pw_forum] PAW

2013-05-08 Thread Suza W
Dear All, Is there any repository of QuantumEspresso where I can get PAW in UPF for Pb, Ti and Ba ? Thanks and regards, Yours sincerely, Suza W R Associate RRI 560080

[Pw_forum] Iron surface Molecular Dynamics

2013-05-08 Thread Vincenzo Verdolino
Dear Giuseppe, Thanks for your enail. I've actually optimized several iron surfaces and settings in pw.x but moving on cp.x and ensamble-DFT I had to change many things such as pseudopotential (here i need a GC PP). If this is important I can paste here one of the pw.x relaxation input file.

[Pw_forum] Iron surface Molecular Dynamics

2013-05-08 Thread Nicola Marzari
Vincenzo, Giuseppe, in principle it was meant to do Born-Oppenheimer MD - i.e. use ensemble-DFT minimization of the electronic-structure (a combination of conjugate-gradient and unitary rotation minimizations), and verlet ionic steps. In practice, I do not think it has ever been tested fully

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Paolo Giannozzi
On Wed, 2013-05-08 at 17:48 +0200, Henning Glawe wrote: > > Anyway: is your problem solved? if not, please specify > > what you need data file for. > > Basically just for running some code patched into pp.x. if you can run the postprocessing code on the same number of processors that were used

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Henning Glawe
On Wed, May 08, 2013 at 04:54:20PM +0200, Paolo Giannozzi wrote: > inside QE there is actually a sort of "wrapper" (PW/src/buffers.f90) > that can read/write to file or to RAM depending upon the value of a > variable. It used to work for a single unit, but now it has been > extended to an

[Pw_forum] Correct patches for Quantum Espresso v5.0.2

2013-05-08 Thread Paolo Giannozzi
On Wed, 2013-05-08 at 17:24 +0200, Thomas Gruber wrote: > from 2013-02-01 this is the date of the release. Unfortunately qe-forge doesn't seem to keep track of the date of the individual files in a release > To patch "missing.diff" after "espresso-5.0.2-5.0.3.diff" is useless it is > and to

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Henning Glawe
On Wed, May 08, 2013 at 05:00:27PM +0200, Paolo Giannozzi wrote: > On Wed, 2013-05-08 at 15:09 +0200, Henning Glawe wrote: > > As far as I understand the code, all IO to outdir is performed via IOTK; > > actually only "small" xml files and files in "collected" format are > written using iotk (the

[Pw_forum] Iron surface Molecular Dynamics

2013-05-08 Thread Giuseppe Mattioli
Dear Vincenzo Before discussing your setup, I note that you are using the ensemble-DFT approach implemented in cp.x. I suspect (but perhaps I may be wrong), that it cannot be used to propagate ions in a proper (NVT, NPT, ...) molecular dynamics simulation, but only to optimize structures

[Pw_forum] Correct patches for Quantum Espresso v5.0.2

2013-05-08 Thread Thomas Gruber
2 -- Thomas Gruber Institut f?r Theoretische Physik TU Bergakademie Freiberg Leipziger Str. 23, 09599 Freiberg, Germany Tel: +49 (0)3731 392006 Email: thomas.gruber at physik.tu-freiberg.de -- next part -- An HTML attachment was scrubbed... URL: http://pwscf.org/pipermail/pw_forum/attachments/20130508/188dfe1c/attachment.html

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Paolo Giannozzi
On Wed, 2013-05-08 at 15:09 +0200, Henning Glawe wrote: > As far as I understand the code, all IO to outdir is performed via IOTK; actually only "small" xml files and files in "collected" format are written using iotk (the latter, in binary format). Large temporary scratch files are written

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Paolo Giannozzi
On Wed, 2013-05-08 at 09:48 +0200, Axel Kohlmeyer wrote: > if there are some people here on the list that would be interested in > having such a wrapper and would be volunteering some time testing and > providing feedback, i might be tempted to give it a try and write such > a wrapper. inside QE

[Pw_forum] PAW

2013-05-08 Thread Arles V. Gil Rebaza
Arles V. <-### -- next part -- An HTML attachment was scrubbed... URL: http://pwscf.org/pipermail/pw_forum/attachments/20130508/09bc142e/attachment.html

[Pw_forum] Iron surface Molecular Dynamics

2013-05-08 Thread Vincenzo Verdolino
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[Pw_forum] graphen with adatoms input

2013-05-08 Thread Stefano de Gironcoli
you can use the cell you have created for the pure graphene, or a 2x2, 3x3 version of it and then simply add the adatom in the desired place . the code will recognize the reduced symmetry and will adapt the list of kpoints accordingly. stefano On 05/08/2013 02:23 PM, yelena wrote: > Hello

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Henning Glawe
On Wed, May 08, 2013 at 09:48:39AM +0200, Axel Kohlmeyer wrote: > have you tried using a ramdisk? if your machine is linux based, then > you can usually access up to half of the physical memory via /dev/shm. Yes, I tried this and it seems to work, in conjunction with tar to transfer data to the

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Henning Glawe
On Wed, May 08, 2013 at 11:39:54AM +0200, Paolo Giannozzi wrote: > On Tue, 2013-05-07 at 22:32 +0200, Henning Glawe wrote: > > > Is this compatible to all postprocessing codes, such as dos.x > > and pp.x and the phonon code ph.x? > > I think it should. It is presently incompatible with option >

[Pw_forum] graphen with adatoms input

2013-05-08 Thread yelena
Hello everyone! I am asking for suggestion. I'm trying to make input for scf calculation (and then for electron-phonon... ) for graphene with adatoms. I've been doing calculation with monolayer graphene and I used hexagonal lattice to describe it and large c/a with vacuum to simulate

[Pw_forum] Details of partial density of states calculation

2013-05-08 Thread Holzwarth, Natalie
/pw_forum/attachments/20130508/b953a576/attachment.html

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Paolo Giannozzi
On Tue, 2013-05-07 at 22:32 +0200, Henning Glawe wrote: > Is this compatible to all postprocessing codes, such as dos.x > and pp.x and the phonon code ph.x? I think it should. It is presently incompatible with option "wf_collect". P. -- Paolo Giannozzi, Dept. Chemistry, Univ. Udine, via

[Pw_forum] Spin-Unrestricted Calculation for O2 Adsorption

2013-05-08 Thread Paolo Giannozzi
On Tue, 2013-05-07 at 19:28 -0400, Vic Bermudez wrote: > starting_magnetization=0.17 should be starting_magnetization(1)=0.17 and should not be needed if option > occupations='from_input' is present. In general: either you set the occupations or the total magnetization, or you set them free

[Pw_forum] Raman cross section for spin-polarized systems?

2013-05-08 Thread Paolo Giannozzi
On Wed, 2013-05-08 at 08:04 +, Ij?s Mari wrote: > the calculation of Raman cross-section is not available for > spin-polarized systems [...] I wonder if there have been advances short answer: no P. -- Paolo Giannozzi, Dept. Chemistry, Univ. Udine, via delle Scienze 208, 33100 Udine,

[Pw_forum] Spin-Unrestricted Calculation for O2 Adsorption

2013-05-08 Thread Nicola Marzari
Dear Vic, I think you could just specify the total_magnetization, and if the surface is metallic, or magnetic, use also smearing? nicola On 08/05/2013 01:28, Vic Bermudez wrote: > Hello, > > I want to do a calculation for O2 (in its triplet ground state) >

[Pw_forum] Performance problems due to files in outdir

2013-05-08 Thread Axel Kohlmeyer
On Tue, May 7, 2013 at 8:57 PM, Henning Glawe wrote: > Moin, > we have recently discovered performance problems on our parallel scratch file > system (fhgfs) in a 400-node-cluster. > Much of the blame went to my quantum espresso jobs (custom-patched 4.3.2). I > am performing calculations on

[Pw_forum] Raman cross section for spin-polarized systems?

2013-05-08 Thread Ijäs Mari
Dear all, at the present, the calculation of Raman cross-section is not available for spin-polarized systems. In the pwscf forum archives, I was only able to find discussions on the topic dating back to 2010. I wonder if there have been advances since then? Best wishes, Mari Ij?s PhD