Re: [QE-users] Problems with DFT + U Calculations: Fatal error in PMPI_Bcast

2018-10-24 Thread Dr. K. C. Bhamu
Dear Prof. Paolo,

I am also having same error on same cluster which Mr. A. Kar using with
QE_6.3 and "composer_xe_2015".
I am invoking the command "mpirun -np 32 $QE/pw.x -npool 2 *in ...
*out  for vc-relax.
For me it happen in the last scf, after a message "End final coordinates".
It went okay till scf cycle 53.
It happens in some cases only.

Below seems strand for me: (grep scf *out)

A final scf calculation at the relaxed structure.
 estimated scf accuracy<   0.35117344 Ry
 estimated scf accuracy<  32.50696577 Ry
 estimated scf accuracy<   0.15737732 Ry
 estimated scf accuracy<   0.08941433 Ry
 estimated scf accuracy<   0.04130004 Ry
 estimated scf accuracy<   0.03367160 Ry
 estimated scf accuracy<   0.01518230 Ry
 estimated scf accuracy<   0.01241863 Ry
 estimated scf accuracy<   0.00237884 Ry
 estimated scf accuracy<   0.02059544 Ry
 estimated scf accuracy<   0.01326459 Ry
 estimated scf accuracy<   0.02823102 Ry
 estimated scf accuracy<   0.14757734 Ry
 estimated scf accuracy<   0.05952341 Ry
 estimated scf accuracy<   0.05929330 Ry
 estimated scf accuracy<   0.00738492 Ry
 estimated scf accuracy<   0.00555608 Ry
 estimated scf accuracy<   0.00535798 Ry
 estimated scf accuracy<   0.00688829 Ry
 estimated scf accuracy<   0.00169491 Ry
 estimated scf accuracy<   0.00067948 Ry
 estimated scf accuracy<   0.06297539 Ry
 estimated scf accuracy<   0.05981938 Ry
 estimated scf accuracy<   0.05814955 Ry
 estimated scf accuracy<   0.06202781 Ry
 estimated scf accuracy<   0.06178400 Ry
 estimated scf accuracy<   0.05837077 Ry
 estimated scf accuracy<   0.07705482 Ry
 estimated scf accuracy<   0.03734422 Ry
 estimated scf accuracy<   0.01355381 Ry
 estimated scf accuracy<   0.02777065 Ry
 estimated scf accuracy<   0.02632385 Ry
 estimated scf accuracy<   0.02607268 Ry
 estimated scf accuracy<   0.01001318 Ry
 estimated scf accuracy<   0.00563499 Ry
 estimated scf accuracy<   0.5798 Ry
 estimated scf accuracy<   0.00066655 Ry
 estimated scf accuracy<   0.0103 Ry
 estimated scf accuracy<   0.0082 Ry
 estimated scf accuracy<   0.0002 Ry
 estimated scf accuracy<   0.0001 Ry
 estimated scf accuracy<  6.0E-11 Ry
 estimated scf accuracy<   0.7832 Ry
 estimated scf accuracy<   0.7830 Ry
 estimated scf accuracy<   0.7712 Ry
 estimated scf accuracy<   0.7558 Ry
 estimated scf accuracy<   0.7271 Ry
 estimated scf accuracy<   0.6239 Ry
 estimated scf accuracy<   0.4313 Ry
 estimated scf accuracy<   0.2601 Ry


I still have double on my PPs. If this is due to something else, please let
me know what additional information I can supply to reproduce the error
message.

Kind regards
Bhamu

CSIR-NCL, Pune
India

On Mon, Oct 22, 2018 at 11:19 AM Paolo Giannozzi 
wrote:

> QE version?
>
> On Sat, Oct 20, 2018 at 9:01 AM arini kar  wrote:
>
>> Dear Quantum Espresso users,
>>
>> I have been trying to relax a 2x2x1 supercell of hematite doped with Ge
>> and an oxygen vacancy. However, after a few electronic iterations, I
>> received the following error:
>>
>> Fatal error in PMPI_Bcast: Other MPI error, error stack:
>> PMPI_Bcast(2112): MPI_Bcast(buf=0x11806c00, count=7500,
>> MPI_DOUBLE_PRECISION, root=0, comm=0x8405) failed
>> MPIR_Bcast_impl(1670)...:
>> I_MPIR_Bcast_intra(1887): Failure during collective
>> MPIR_Bcast_intra(1524)..: Failure during collective
>> Fatal error in PMPI_Bcast: Other MPI error, error stack:
>> PMPI_Bcast(2112): MPI_Bcast(buf=0x56fced0, count=7500,
>> MPI_DOUBLE_PRECISION, root=0, comm=0x8405) failed
>> MPIR_Bcast_impl(1670)...:
>> I_MPIR_Bcast_intra(1887): Failure during collective
>> MPIR_Bcast_intra(1524)..: Failure during collective
>> Fatal error in PMPI_Bcast: Other MPI error, error stack:
>> PMPI_Bcast(2112): MPI_Bcast(buf=0x1080d330, count=7500,
>> MPI_DOUBLE_PRECISION, root=0, comm=0x8405) failed
>> MPIR_Bcast_impl(1670)...:
>> I_MPIR_Bcast_intra(1887): Failure during collective
>> MPIR_Bcast_intra(1524)..: Failure during collective
>> Fatal error in PMPI_Bcast: Other MPI error, error stack:
>> PMPI_Bcast(2112): MPI_Bcast(buf=0x10c025c0, count=7500,
>> MPI_DOUBLE_PRECISION, root=0, comm=0x8405) failed
>> MPIR_Bcast_impl(1670)...:
>> I_MPIR_Bcast_intra(1887): Failure during collective
>> MPIR_Bcast_intra(1524)..: Failure during collective
>> Fatal error in PMPI_Bcast: Other MPI error, error stack:

Re: [QE-users] Problems with DFT + U Calculations: Fatal error in PMPI_Bcast

2018-10-24 Thread arini kar
Dear Sir,

The error arises in the middle during any scf iteration. In some of the
calculations, the error arises during the last scf calculation while in
some other it arises in the middle of the run.

Is it due to some issues with parallelization? If so then what would be the
appropriate parallelization? I am currently using the default
parallelization.

Regards
Arini Kar
M.Sc.-Ph.D.
IIT Bombay
India
___
users mailing list
users@lists.quantum-espresso.org
https://lists.quantum-espresso.org/mailman/listinfo/users