error-page exception-type subclasses of RuntimeException are not handled

2010-05-11 Thread bryan jacobs
Tomcat Version: apache-tomcat-6.0.26 JDK: jdk1.6.0_19 OS: Windows XP Service Pack 2 I am using the element in my web.xml with the element which contains a subclass of RuntimeException. When I subclass RuntimeException the element which specifies my error-page to land on in the event that

Re: set up tomcat for biopython

2010-05-11 Thread Felix Schumacher
Am Dienstag, den 11.05.2010, 17:36 +0200 schrieb Silvio Tschapke: > Hi all, > > how do I configure tomcat that it finds the biopython libaries? > Biopython is not included in jython.jar (which I have moved into the > tomcat/lib folder. > Biopython installs itself into the python26/lib/side-package

RE: Appserver Queues Filling Up

2010-05-11 Thread Ben Knight
Hey Chris, Thanks for the reply. We have yet to do a thread dump. I was actually waiting for the queues to fill up again to do just that. In the meantime, I have JBoss v. 5.1.0GA and JBoss web v. 2.1.3GA. Which versions of Tomcat have had problems? Thanks Ben -Original Message- From

Re: set up tomcat for biopython

2010-05-11 Thread André Warnier
Silvio Tschapke wrote: Ok, I will try this. Thanks a lot for your help! On Tue, May 11, 2010 at 7:50 PM, Christopher Schultz < ch...@christopherschultz.net> wrote: [...] org.python.util.PythonInterpreter.execfile(PythonInterpreter.java:190) factory.JythonFactory.getJythonObject(Jytho

Re: Tomcat 100% CPU usage after moving from Java 5 to 6

2010-05-11 Thread qalab17
I'm also attempting to track down a cpu usage problem in tomcat. Can someone tell me how to generate thread dumps that includes the "cpu=" information like the ones Jesse attached? "ajp-8009-18" Id=187 in RUNNABLE cpu=242046 ms usr=242015 ms blocked 315 for -1 ms waited 256 for -1 ms When I crea

Re: set up tomcat for biopython

2010-05-11 Thread Silvio Tschapke
Ok, I will try this. Thanks a lot for your help! On Tue, May 11, 2010 at 7:50 PM, Christopher Schultz < ch...@christopherschultz.net> wrote: > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > Silvio, > > On 5/11/2010 1:09 PM, Silvio Tschapke wrote: > > On 5/11/2010 11:36 AM, Silvio Tschapke wr

Re: set up tomcat for biopython

2010-05-11 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Silvio, On 5/11/2010 1:09 PM, Silvio Tschapke wrote: > On 5/11/2010 11:36 AM, Silvio Tschapke wrote: how do I configure tomcat that it finds the biopython libaries? Biopython is not included in jython.jar (which I have moved into the to

Re: set up tomcat for biopython

2010-05-11 Thread André Warnier
Silvio Tschapke wrote: I took a look at jython and actually I am trying to implement a java servlet which calls a python module with help of jython. But I am not sure how and if I can use Biopython inside my jython modules. I do not know anything about jython (or python for that matter), but by

Re: set up tomcat for biopython

2010-05-11 Thread Silvio Tschapke
I took a look at jython and actually I am trying to implement a java servlet which calls a python module with help of jython. But I am not sure how and if I can use Biopython inside my jython modules. On Tue, May 11, 2010 at 6:44 PM, Martin Gainty wrote: > > i would start here > > > > http://sou

Re: set up tomcat for biopython

2010-05-11 Thread Silvio Tschapke
First of all, thanks for your reply! On Tue, May 11, 2010 at 6:33 PM, Christopher Schultz < ch...@christopherschultz.net> wrote: > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > Silvio, > > I'm not familiar with biopython, so... > > On 5/11/2010 11:36 AM, Silvio Tschapke wrote: > > how do I

RE: set up tomcat for biopython

2010-05-11 Thread Martin Gainty
i would start here http://sourceforge.net/projects/jython/files/ feel free to ask any questions hth Martin Gainty __ Verzicht und Vertraulichkeitanmerkung/Note de déni et de confidentialité Diese Nachricht ist vertraulich. Sollten Sie nic

Re: Appserver Queues Filling Up

2010-05-11 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Ben, On 5/10/2010 4:35 PM, Ben Knight wrote: > We are having a Wicket-based Java application deployed in a production > server cluster using Apache (2.2.3) with mod_jk (1.2.30) as load balancing > component w/ sticky session and Jboss 5 as application

Re: set up tomcat for biopython

2010-05-11 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Silvio, I'm not familiar with biopython, so... On 5/11/2010 11:36 AM, Silvio Tschapke wrote: > how do I configure tomcat that it finds the biopython libaries? > Biopython is not included in jython.jar (which I have moved into the > tomcat/lib folder.

set up tomcat for biopython

2010-05-11 Thread Silvio Tschapke
Hi all, how do I configure tomcat that it finds the biopython libaries? Biopython is not included in jython.jar (which I have moved into the tomcat/lib folder. Biopython installs itself into the python26/lib/side-packages folder. But how can I tell tomcat about this? There is no python.jar neithe

Re: snort detecting ICMP traffic, tomcat?

2010-05-11 Thread Pid
On 11/05/2010 15:17, James R. Marcus wrote: > Hi, > I run Snort in a PCI environment. I have just rebuilt Snort and I’m in the > tuning stage. > > I have Tomcat 6.0.18 in the PCI environment and it may be initiating ICMP > traffic to external IPs. Here is the alert: > > [1:486:5] ICMP Destinati

RE: snort detecting ICMP traffic, tomcat?

2010-05-11 Thread Caldarale, Charles R
> From: James R. Marcus [mailto:jmar...@edhance.com] > Subject: snort detecting ICMP traffic, tomcat? > > Could Tomcat be generating ICMP traffic to an IP accessing the server? No. Java is not capable of generating ICMP messages. - Chuck THIS COMMUNICATION MAY CONTAIN CONFIDENTIAL AND/OR OTH

snort detecting ICMP traffic, tomcat?

2010-05-11 Thread James R. Marcus
Hi, I run Snort in a PCI environment. I have just rebuilt Snort and I’m in the tuning stage. I have Tomcat 6.0.18 in the PCI environment and it may be initiating ICMP traffic to external IPs. Here is the alert: [1:486:5] ICMP Destination Unreachable Communication with Destination Host is Admin

Re: java servlets, jsp and python

2010-05-11 Thread Pid
On 11/05/2010 13:45, Martin Gainty wrote: > ping offline if you need further assistance, No, don't do that. We keep things on-list, so others can benefit from the finding a solution. p > Martin Gainty > __ > Verzicht und Vertraulichkeitanmerkung

RE: java servlets, jsp and python

2010-05-11 Thread Martin Gainty
org.python.util.PythonInterpreter.class is located in jython.jar http://www.jython.org/Project/download.html ping offline if you need further assistance, Martin Gainty __ Verzicht und Vertraulichkeitanmerkung/Note de déni et de confidentialité

Re: java servlets, jsp and python

2010-05-11 Thread Konstantin Kolinko
2010/5/11 anoop singh khimani : > how to unsubscribe this mailing list?? > http://tomcat.apache.org/lists.html#tomcat-users 1. Send a short e-mail to users-unsubscr...@tomcat.apache.org Make sure, that the mail has a subject and non-empty body, so that it is not rejected by spam filter. 2. A confi

Re: java servlets, jsp and python

2010-05-11 Thread anoop singh khimani
how to unsubscribe this mailing list?? On Tue, May 11, 2010 at 4:50 PM, Silvio Tschapke < silvio.tscha...@googlemail.com> wrote: > I have searched for jython and implemented some examples how to access > jython code from java classes (e.g. with the ObjectFactory Pattern). > Everything works fine

Re: java servlets, jsp and python

2010-05-11 Thread Silvio Tschapke
I have searched for jython and implemented some examples how to access jython code from java classes (e.g. with the ObjectFactory Pattern). Everything works fine outside the server. But if I create a Dynamic Web Project to access jython code from a java servlet, eclipse cannot find the org.python.u

Re: Running PHP 5.2.X on Tomcat 5.5?

2010-05-11 Thread Gregor Schneider
On Tue, May 11, 2010 at 10:28 AM, Gregers Blach wrote: > Hi all, > > > 1. No one recommends running PHP on Tomcat. Instead running httpd is > recommended. > right > > 2. No one is able to provide me with a guide for setting up Tomcat to run > PHP. I guess this must be because no one does this...

Re: Running PHP 5.2.X on Tomcat 5.5?

2010-05-11 Thread Gregers Blach
Hi all, Thanks for your replies so far. It seems like: 1. No one recommends running PHP on Tomcat. Instead running httpd is recommended. 2. No one is able to provide me with a guide for setting up Tomcat to run PHP. I guess this must be because no one does this... :o) To bad - I really wou