RE: Deploying emboss in Opal2
Date: Fri, 8 Jul 2011 10:39:16 -0700 From: its_toas...@yahoo.com Subject: Re: Deploying emboss in Opal2 To: users@tomcat.apache.org - Original Message - From: jeroen vannevel jer_vanne...@hotmail.com To: users@tomcat.apache.org Cc: Sent: Friday, July 8, 2011 6:37 AM Subject: RE: Deploying emboss in Opal2 Date: Fri, 8 Jul 2011 15:21:05 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Date: Fri, 8 Jul 2011 14:04:37 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. It is possible that someone here would not the emboss application, but more likely that they would not. This is just a preliminary to ask : does the emboss program have a mailing list, and did you ask there ? Other than that, it would help if you provide some additional details : - on what platform are you trying this ? - where (in what directory) is Tomcat installed ? - what is the path to the Tomcat webapps directory ? - what is the name of your .war file ? - how are you uploading your .war file to Tomcat ? - where does the .war file end up when it is uploaded ? - in the Tomcat configuration file ..(tomcat_dir)/conf/server.xml, there is (at least) one Host tag. Can you copy it here ? They do, but I've just signed up there and I'm not sure if it's a very active one. Figured I might as well test my luck and ask here. As for additional information: - Ubuntu 11.04 - /home/myname/Downloads/apache-tomcat-5.5.33/ - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/ - emboss.war - using the built-in File-Upload menu in Tomcat's Manager. (so the 2nd option to deploy an app) - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/emboss.war Host name=localhost appBase=webapps unpackWARs=true autoDeploy=true xmlValidation=false xmlNamespaceAware=false Alias10.0.102.165/Alias /Host At first sight, that all looks good to me (except a detail irrelevant here) Next questions : - what is the URL you use, to try to access this application ? - what do the Tomcat logfiles say ? .. and, if the URL you used was not the same, what happens when you try to access : http://your-host-name[:port]/emboss And the irrelevant detail is : If the above Host tag is the only one which is contained in the server.xml file, then the line Alias10.0.102.165/Alias is unnecessary. Tomcat will default to this Host anyway for all accesses. The URL I use is http://localhost:8080/emboss, as you said it should be. Perhaps it is of use to know that http://localhost:8080/opal2 does work and shows me the page I expect there. The logfiles from catalina.out when restarting the service and browsing to the emboss location: http://pastebin.com/UUn2dxmD I've used that Alias tag to try and get another program in opal2 to use this IP adress so it would've been accessible from somewhere else in the network. This failed, the application in opal2 (it was called Babel) kept linking to http://localhost instead of the alias. Not that it really matters, we didn't need that application and it was for testing purposes. The log files show that there is something else running on port 8080: SEVERE: Error initializing endpoint java.net.BindException: Address already in use:8080 Are you running both Ubuntu's installation of Tomcat and one downloaded from tomcat.apache.org? Just run one copy. You can get everything running in one Tomcat by using the manager application and installing WAR files. See: http://tomcat.apache.org/tomcat-5.5-doc/manager-howto.html for how this works. Accessing Tomcat at port 8080 from another host should be fairly straightforward. Just go to: http://ip-address:8080/opal2 to get to the Opal 2 application (for example). If your hostname / IP address is in DNS (check with your network person), or of the hostname / IP address exists in the other machine's host file, then: http://hostname:8080/opal2 should work. I don't know Ubuntu Linux (I run Fedora), but accessing http://hostname:8080/opal2 from a remote
Deploying emboss in Opal2
Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. Yours Jeroen V.
Re: Deploying emboss in Opal2
jeroen vannevel wrote: Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. It is possible that someone here would not the emboss application, but more likely that they would not. This is just a preliminary to ask : does the emboss program have a mailing list, and did you ask there ? Other than that, it would help if you provide some additional details : - on what platform are you trying this ? - where (in what directory) is Tomcat installed ? - what is the path to the Tomcat webapps directory ? - what is the name of your .war file ? - how are you uploading your .war file to Tomcat ? - where does the .war file end up when it is uploaded ? - in the Tomcat configuration file ..(tomcat_dir)/conf/server.xml, there is (at least) one Host tag. Can you copy it here ? - To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org For additional commands, e-mail: users-h...@tomcat.apache.org
RE: Deploying emboss in Opal2
Date: Fri, 8 Jul 2011 14:04:37 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. It is possible that someone here would not the emboss application, but more likely that they would not. This is just a preliminary to ask : does the emboss program have a mailing list, and did you ask there ? Other than that, it would help if you provide some additional details : - on what platform are you trying this ? - where (in what directory) is Tomcat installed ? - what is the path to the Tomcat webapps directory ? - what is the name of your .war file ? - how are you uploading your .war file to Tomcat ? - where does the .war file end up when it is uploaded ? - in the Tomcat configuration file ..(tomcat_dir)/conf/server.xml, there is (at least) one Host tag. Can you copy it here ? They do, but I've just signed up there and I'm not sure if it's a very active one. Figured I might as well test my luck and ask here. As for additional information: - Ubuntu 11.04 - /home/myname/Downloads/apache-tomcat-5.5.33/ - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/ - emboss.war - using the built-in File-Upload menu in Tomcat's Manager. (so the 2nd option to deploy an app) - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/emboss.war Host name=localhost appBase=webapps unpackWARs=true autoDeploy=true xmlValidation=false xmlNamespaceAware=false Alias10.0.102.165/Alias /Host - To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org For additional commands, e-mail: users-h...@tomcat.apache.org
Re: Deploying emboss in Opal2
jeroen vannevel wrote: Date: Fri, 8 Jul 2011 14:04:37 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. It is possible that someone here would not the emboss application, but more likely that they would not. This is just a preliminary to ask : does the emboss program have a mailing list, and did you ask there ? Other than that, it would help if you provide some additional details : - on what platform are you trying this ? - where (in what directory) is Tomcat installed ? - what is the path to the Tomcat webapps directory ? - what is the name of your .war file ? - how are you uploading your .war file to Tomcat ? - where does the .war file end up when it is uploaded ? - in the Tomcat configuration file ..(tomcat_dir)/conf/server.xml, there is (at least) one Host tag. Can you copy it here ? They do, but I've just signed up there and I'm not sure if it's a very active one. Figured I might as well test my luck and ask here. As for additional information: - Ubuntu 11.04 - /home/myname/Downloads/apache-tomcat-5.5.33/ - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/ - emboss.war - using the built-in File-Upload menu in Tomcat's Manager. (so the 2nd option to deploy an app) - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/emboss.war Host name=localhost appBase=webapps unpackWARs=true autoDeploy=true xmlValidation=false xmlNamespaceAware=false Alias10.0.102.165/Alias /Host At first sight, that all looks good to me (except a detail irrelevant here) Next questions : - what is the URL you use, to try to access this application ? - what do the Tomcat logfiles say ? .. and, if the URL you used was not the same, what happens when you try to access : http://your-host-name[:port]/emboss And the irrelevant detail is : If the above Host tag is the only one which is contained in the server.xml file, then the line Alias10.0.102.165/Alias is unnecessary. Tomcat will default to this Host anyway for all accesses. - To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org For additional commands, e-mail: users-h...@tomcat.apache.org
RE: Deploying emboss in Opal2
Date: Fri, 8 Jul 2011 15:21:05 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Date: Fri, 8 Jul 2011 14:04:37 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. It is possible that someone here would not the emboss application, but more likely that they would not. This is just a preliminary to ask : does the emboss program have a mailing list, and did you ask there ? Other than that, it would help if you provide some additional details : - on what platform are you trying this ? - where (in what directory) is Tomcat installed ? - what is the path to the Tomcat webapps directory ? - what is the name of your .war file ? - how are you uploading your .war file to Tomcat ? - where does the .war file end up when it is uploaded ? - in the Tomcat configuration file ..(tomcat_dir)/conf/server.xml, there is (at least) one Host tag. Can you copy it here ? They do, but I've just signed up there and I'm not sure if it's a very active one. Figured I might as well test my luck and ask here. As for additional information: - Ubuntu 11.04 - /home/myname/Downloads/apache-tomcat-5.5.33/ - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/ - emboss.war - using the built-in File-Upload menu in Tomcat's Manager. (so the 2nd option to deploy an app) - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/emboss.war Host name=localhost appBase=webapps unpackWARs=true autoDeploy=true xmlValidation=false xmlNamespaceAware=false Alias10.0.102.165/Alias /Host At first sight, that all looks good to me (except a detail irrelevant here) Next questions : - what is the URL you use, to try to access this application ? - what do the Tomcat logfiles say ? .. and, if the URL you used was not the same, what happens when you try to access : http://your-host-name[:port]/emboss And the irrelevant detail is : If the above Host tag is the only one which is contained in the server.xml file, then the line Alias10.0.102.165/Alias is unnecessary. Tomcat will default to this Host anyway for all accesses. The URL I use is http://localhost:8080/emboss, as you said it should be. Perhaps it is of use to know that http://localhost:8080/opal2 does work and shows me the page I expect there. The logfiles from catalina.out when restarting the service and browsing to the emboss location: http://pastebin.com/UUn2dxmD I've used that Alias tag to try and get another program in opal2 to use this IP adress so it would've been accessible from somewhere else in the network. This failed, the application in opal2 (it was called Babel) kept linking to http://localhost instead of the alias. Not that it really matters, we didn't need that application and it was for testing purposes. - To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org For additional commands, e-mail: users-h...@tomcat.apache.org
Re: Deploying emboss in Opal2
- Original Message - From: jeroen vannevel jer_vanne...@hotmail.com To: users@tomcat.apache.org Cc: Sent: Friday, July 8, 2011 6:37 AM Subject: RE: Deploying emboss in Opal2 Date: Fri, 8 Jul 2011 15:21:05 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Date: Fri, 8 Jul 2011 14:04:37 +0200 From: a...@ice-sa.com To: users@tomcat.apache.org Subject: Re: Deploying emboss in Opal2 jeroen vannevel wrote: Hello I've installed Opal2 on my Tomcat 5.5.33 server and now I'd like to make the emboss programs available in this. I've been working on this for two days and I just seem to trample at the same spot. Perhaps someone has the required files or could tell me how to deal with this specific case? I've tried compiling all the emboss programs and put them in a .war package but after uploading this to Tomcat I just keep getting 'The requested r= esource () is not available.' error messages. It is possible that someone here would not the emboss application, but more likely that they would not. This is just a preliminary to ask : does the emboss program have a mailing list, and did you ask there ? Other than that, it would help if you provide some additional details : - on what platform are you trying this ? - where (in what directory) is Tomcat installed ? - what is the path to the Tomcat webapps directory ? - what is the name of your .war file ? - how are you uploading your .war file to Tomcat ? - where does the .war file end up when it is uploaded ? - in the Tomcat configuration file ..(tomcat_dir)/conf/server.xml, there is (at least) one Host tag. Can you copy it here ? They do, but I've just signed up there and I'm not sure if it's a very active one. Figured I might as well test my luck and ask here. As for additional information: - Ubuntu 11.04 - /home/myname/Downloads/apache-tomcat-5.5.33/ - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/ - emboss.war - using the built-in File-Upload menu in Tomcat's Manager. (so the 2nd option to deploy an app) - /home/myname/Downloads/apache-tomcat-5.5.33/webapps/emboss.war Host name=localhost appBase=webapps unpackWARs=true autoDeploy=true xmlValidation=false xmlNamespaceAware=false Alias10.0.102.165/Alias /Host At first sight, that all looks good to me (except a detail irrelevant here) Next questions : - what is the URL you use, to try to access this application ? - what do the Tomcat logfiles say ? .. and, if the URL you used was not the same, what happens when you try to access : http://your-host-name[:port]/emboss And the irrelevant detail is : If the above Host tag is the only one which is contained in the server.xml file, then the line Alias10.0.102.165/Alias is unnecessary. Tomcat will default to this Host anyway for all accesses. The URL I use is http://localhost:8080/emboss, as you said it should be. Perhaps it is of use to know that http://localhost:8080/opal2 does work and shows me the page I expect there. The logfiles from catalina.out when restarting the service and browsing to the emboss location: http://pastebin.com/UUn2dxmD I've used that Alias tag to try and get another program in opal2 to use this IP adress so it would've been accessible from somewhere else in the network. This failed, the application in opal2 (it was called Babel) kept linking to http://localhost instead of the alias. Not that it really matters, we didn't need that application and it was for testing purposes. The log files show that there is something else running on port 8080: SEVERE: Error initializing endpoint java.net.BindException: Address already in use:8080 Are you running both Ubuntu's installation of Tomcat and one downloaded from tomcat.apache.org? Just run one copy. You can get everything running in one Tomcat by using the manager application and installing WAR files. See: http://tomcat.apache.org/tomcat-5.5-doc/manager-howto.html for how this works. Accessing Tomcat at port 8080 from another host should be fairly straightforward. Just go to: http://ip-address:8080/opal2 to get to the Opal 2 application (for example). If your hostname / IP address is in DNS (check with your network person), or of the hostname / IP address exists in the other machine's host file, then: http://hostname:8080/opal2 should work. I don't know Ubuntu Linux (I run Fedora), but accessing http://hostname:8080/opal2 from a remote machine might also run into some firewall issues. In Fedora, I would add the following line to /etc/sysconfig/ipatables and restart the firewall. -A INPUT -m state --state NEW -m tcp -p tcp --dport 8080 -s 192.168.0.0/24 -j ACCEPT Adjust the 192.168.0.0/24 to meet your needs. I suspect
