[OMPI users] compilation problem with ifort

2014-09-03 Thread Elio Physics
Dear all, I am really a beginner in Fortran and Linux. I was trying to compile a software (EPW). Everything was going fine (or maybe this is what I think): mpif90 -o epw.x ../../Modules/atom.o ../../Modules/basic_algebra_routines.o ../../Modules/cell_base.o ../../Modules/check_stop.o

Re: [OMPI users] compilation problem with ifort

2014-09-03 Thread Elio Physics
] compilation problem with ifort > > Was the error that you listed the *first* error? > > Apparently various object files are missing from the > ../../Modules/ directory, and were not compiled, > suggesting something is amiss even before the > compilation of the executable (ep

Re: [OMPI users] compilation problem with ifort

2014-09-03 Thread Elio Physics
t it, configure it, etc? > > Do they have a mailing list or bulletin board where you could get > specific help for their software? > (Either on EPW or on QuantumExpresso (which seems to be required): > http://www.quantum-espresso.org/) > That would probably be the right fo

Re: [OMPI users] compilation problem with ifort

2014-09-03 Thread Elio Physics
s have been the problem (older version)? > Did you try the latest QE (4.0.3), and the latest EPW (3.0.0), > as per the recipe on the EPW web site? > > http://epw.org.uk/Main/DownloadAndInstall > > ** > > I hope this helps, > Gus Correa > > > > > On 09/0

Re: [OMPI users] compilation problem with ifort

2014-09-04 Thread Elio Physics
-I../../PW -I../../PH -I../../PP > LIBOBJS = ../../flib/ptools.a ../../flib/flib.a \ > ../../clib/clib.a ../../iotk/src/libiotk.a > W90LIB = ../../W90/libwannier.a > ** > > Hence, if your QE directory is not immediately above your EPW directory >

Re: [OMPI users] compilation problem with ifort

2014-09-04 Thread Elio Physics
ules -I../../iotk/src \ > -I../../PW -I../../PH -I../../PP > LIBOBJS = ../../flib/ptools.a ../../flib/flib.a \ > ../../clib/clib.a ../../iotk/src/libiotk.a > W90LIB = ../../W90/libwannier.a > ** > > Hence, if your QE directory is not imme

Re: [OMPI users] compilation problem with ifort

2014-09-06 Thread Elio Physics
t; ** > > Hence, if your QE directory is not immediately above your EPW directory > everything will fail, because the EPW Makefile won't be able to find > the bits and parts of QE that it needs. > And this is *exactly what the error message in your first email showed*, > a

[OMPI users] configuring a code with MPI/OPENMPI

2015-02-03 Thread Elio Physics
Dear all, II am trying to configure a code with mpi (for parallel processing) to do some calculations so basically I type: ./configure and I get: configure: error: Fortran compiler does not provide iso_c_binding module. Use a more recent version or a different compiler which means that my

Re: [OMPI users] configuring a code with MPI/OPENMPI

2015-02-03 Thread Elio Physics
an MPI installation already present? 2015-02-03 17:13 GMT+00:00 Elio Physics <elio-phys...@live.com>: Dear all, II am trying to configure a code with mpi (for parallel processing) to do some calculations so basically I type: ./configure and I get: configure: error: Fortran compile

Re: [OMPI users] configuring a code with MPI/OPENMPI

2015-02-03 Thread Elio Physics
Nick Papior Andersen <nickpap...@gmail.com>: 2015-02-03 19:12 GMT+00:00 Elio Physics <elio-phys...@live.com>: Hello, thanks for your help. I have tried: ./configure --with-mpi-prefix=/usr FC=ifort CC=icc But i still get the same error. Mind you if I compile it serially, that

Re: [OMPI users] Problems in compiling a code with dynamic linking

2016-03-24 Thread Elio Physics
ically use the most up to date mkl lib when they get upgraded by your sysadmin */ Cheers, Gilles On 3/24/2016 11:03 AM, Elio Physics wrote: Dear all, I have been trying ,for the last week, compiling a code (SPRKKR). the compilation went through ok. however, there are problems with the exe

Re: [OMPI users] Problems in compiling a code with dynamic linking

2016-03-25 Thread Elio Physics
ind that by yourself. > > an other option is to use the static mkl libs if they are available > for example, your LIB line could be > > LIB = -static -L/opt/intel/composer_xe_2013_sp1/mkl/lib/intel64 > -lmkl_blas95_lp64 -lmkl_lapack95_lp64 -lmkl_intel_lp64 -lmkl_core > -lmkl_sequential

[OMPI users] MPIRUN SEGMENTATION FAULT

2016-04-23 Thread Elio Physics
Dear all, I have successfully compiled a code where the executable have been produced. However when I started using the executable with mpirun, the code stopped with the following error: "mpirun noticed that process rank 0 with PID 570 on node compute-1-9.local exited on signal 11

Re: [OMPI users] MPIRUN SEGMENTATION FAULT

2016-04-23 Thread Elio Physics
core file using a debugger like gdb to see why it failed. On Apr 22, 2016, at 8:32 PM, Elio Physics <elio-phys...@live.com<mailto:elio-phys...@live.com>> wrote: Dear all, I have successfully compiled a code where the executable have been produced. However when I started using the execu

Re: [OMPI users] MPIRUN SEGMENTATION FAULT

2016-04-23 Thread Elio Physics
One more thing i forgot to mention in my previous e-mail. In the output file I get the following message: 2 total processes killed (some possibly by mpirun during cleanup) Thanks From: users <users-boun...@open-mpi.org> on behalf of Elio Physics <

Re: [OMPI users] MPIRUN SEGMENTATION FAULT

2016-04-23 Thread Elio Physics
application could be segfaulting. Take a look at the core file with gdb and find out where it is failing. On Apr 22, 2016, at 10:20 PM, Elio Physics <elio-phys...@live.com<mailto:elio-phys...@live.com>> wrote: One more thing i forgot to mention in my previous e-mail. In the output f

Re: [OMPI users] MPIRUN SEGMENTATION FAULT

2016-04-23 Thread Elio Physics
cit their help. If you wrote it, well, it is never a bad time to learn to use gdb! Best regards Andy On 04/23/2016 10:41 AM, Elio Physics wrote: I am not really an expert with gdb. What is the core file? and how to use gdb? I have got three files as an output when the executable is used. One

Re: [OMPI users] MPIRUN SEGMENTATION FAULT

2016-04-23 Thread Elio Physics
, 2016, at 8:03 AM, Elio Physics <elio-phys...@live.com<mailto:elio-phys...@live.com>> wrote: Hello Andy, the program is not mine. I have got it from a group upon request. It might be program related because I run other codes such as quantum espresso and work perfectly fine although