Re: [OMPI users] error building openmpi-3.0.1 on Linux with gcc or Sun C and Java-10
Siegmar, Thanks for your report. But it is a known issue and will be fixed in Open MPI v3.0.2. https://github.com/open-mpi/ompi/pull/5029 If you want it now in v3.0.x series, try the latest nightly snapshot. https://www.open-mpi.org/nightly/v3.0.x/ Regards, Takahiro Kawashima, MPI development team, Fujitsu > Hi, > > I've tried to install openmpi-3.0.1 on my "SUSE Linux Enterprise Server 12.3 > (x86_64)" with gcc-6.4.0 or Sun C 5.15 and Java-10. Unfortunately I get the > following error. I can build it with both C compilers and Java-9 and I can > build openmpi-v3.1.x-201804110302-be0843e and > openmpi-master-201804110351-664ba32 > with both compilers and Java-10. > > loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 159 head -7 config.log | tail -1 >$ ../openmpi-3.0.1/configure --prefix=/usr/local/openmpi-3.0.1_64_gcc > --libdir=/usr/local/openmpi-3.0.1_64_gcc/lib64 > --with-jdk-bindir=/usr/local/jdk-10/bin > --with-jdk-headers=/usr/local/jdk-10/include JAVA_HOME=/usr/local/jdk-10 > LDFLAGS=-m64 CC=gcc CXX=g++ FC=gfortran CFLAGS=-m64 CXXFLAGS=-m64 > FCFLAGS=-m64 > CPP=cpp CXXCPP=cpp --enable-mpi-cxx --enable-cxx-exceptions --enable-mpi-java > --with-cuda=/usr/local/cuda --with-valgrind=/usr/local/valgrind > --with-hwloc=internal --without-verbs --with-wrapper-cflags=-std=c11 -m64 > --with-wrapper-cxxflags=-m64 --with-wrapper-fcflags=-m64 --enable-debug > > > > loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 170 more > log.make.Linux.x86_64.64_gcc > Making all in config > make[1]: Entering directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/config' > ... > /JAVAH > ...skipping > make[3]: Entering directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi/mpi/java/java' >JAVACMPI.class >JAVAHmpi_MPI.h >JAVAHmpi_CartParms.h >JAVAHmpi_CartComm.h >JAVAHmpi_Constant.h >JAVAHmpi_Comm.h >JAVAHmpi_Count.h > Error: Could not find class file for 'mpi.CartParms'. > Makefile:2178: recipe for target 'mpi_CartParms.h' failed > make[3]: *** [mpi_CartParms.h] Error 1 > make[3]: *** Waiting for unfinished jobs > Error: Could not find class file for 'mpi.MPI'. > Makefile:2178: recipe for target 'mpi_MPI.h' failed > make[3]: *** [mpi_MPI.h] Error 1 > Error: Could not find class file for 'mpi.Comm'. > Error: Could not find class file for 'mpi.Constant'. > Error: Could not find class file for 'mpi.CartComm'. > Makefile:2178: recipe for target 'mpi_Comm.h' failed > make[3]: *** [mpi_Comm.h] Error 1 > Makefile:2178: recipe for target 'mpi_Constant.h' failed > make[3]: *** [mpi_Constant.h] Error 1 > Error: Could not find class file for 'mpi.Count'. > Makefile:2178: recipe for target 'mpi_CartComm.h' failed > make[3]: *** [mpi_CartComm.h] Error 1 > Makefile:2178: recipe for target 'mpi_Count.h' failed > make[3]: *** [mpi_Count.h] Error 1 > make[3]: Leaving directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi/mpi/java/java' > Makefile:1720: recipe for target 'all-recursive' failed > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi/mpi/java' > Makefile:3421: recipe for target 'all-recursive' failed > make[1]: *** [all-recursive] Error 1 > make[1]: Leaving directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi' > Makefile:1873: recipe for target 'all-recursive' failed > make: *** [all-recursive] Error 1 > loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 171 > > > loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 161 ls -l > ompi/mpi/java/java/mpi/CartComm.class > -rw-r--r-- 1 root root 2621 Apr 12 16:46 ompi/mpi/java/java/mpi/CartComm.class > loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 162 > > > > > > Java-9: > === > > loki openmpi-3.0.1-Linux.x86_64.64_gcc 166 head -7 config.log | tail -1 >$ ../openmpi-3.0.1/configure --prefix=/usr/local/openmpi-3.0.1_64_gcc > --libdir=/usr/local/openmpi-3.0.1_64_gcc/lib64 > --with-jdk-bindir=/usr/local/jdk-9/bin > --with-jdk-headers=/usr/local/jdk-9/include JAVA_HOME=/usr/local/jdk-9 > LDFLAGS=-m64 CC=gcc CXX=g++ FC=gfortran CFLAGS=-m64 CXXFLAGS=-m64 > FCFLAGS=-m64 > CPP=cpp CXXCPP=cpp --enable-mpi-cxx --enable-cxx-exceptions --enable-mpi-java > --with-cuda=/usr/local/cuda --with-valgrind=/usr/local/valgrind > --with-hwloc=internal --without-verbs --with-wrapper-cflags=-std=c11 -m64 > --with-wrapper-cxxflags=-m64 --with-wrapper-fcflags=-m64 --enable-debug > > > loki openmpi-3.0.1-Linux.x86_64.64_gcc 168 more log.make.Linux.x86_64.64_gcc > Making all in config > make[1]: Entering directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc/config' > ... > /JAVAH > ...skipping > make[3]: Entering directory > '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc/ompi/mpi/java/java' >JAVACMPI.class >JAVAHmpi_MPI.h >JAVAHmpi_CartParms.h >
[OMPI users] error building openmpi-3.0.1 on Linux with gcc or Sun C and Java-10
Hi, I've tried to install openmpi-3.0.1 on my "SUSE Linux Enterprise Server 12.3 (x86_64)" with gcc-6.4.0 or Sun C 5.15 and Java-10. Unfortunately I get the following error. I can build it with both C compilers and Java-9 and I can build openmpi-v3.1.x-201804110302-be0843e and openmpi-master-201804110351-664ba32 with both compilers and Java-10. loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 159 head -7 config.log | tail -1 $ ../openmpi-3.0.1/configure --prefix=/usr/local/openmpi-3.0.1_64_gcc --libdir=/usr/local/openmpi-3.0.1_64_gcc/lib64 --with-jdk-bindir=/usr/local/jdk-10/bin --with-jdk-headers=/usr/local/jdk-10/include JAVA_HOME=/usr/local/jdk-10 LDFLAGS=-m64 CC=gcc CXX=g++ FC=gfortran CFLAGS=-m64 CXXFLAGS=-m64 FCFLAGS=-m64 CPP=cpp CXXCPP=cpp --enable-mpi-cxx --enable-cxx-exceptions --enable-mpi-java --with-cuda=/usr/local/cuda --with-valgrind=/usr/local/valgrind --with-hwloc=internal --without-verbs --with-wrapper-cflags=-std=c11 -m64 --with-wrapper-cxxflags=-m64 --with-wrapper-fcflags=-m64 --enable-debug loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 170 more log.make.Linux.x86_64.64_gcc Making all in config make[1]: Entering directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/config' ... /JAVAH ...skipping make[3]: Entering directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi/mpi/java/java' JAVACMPI.class JAVAHmpi_MPI.h JAVAHmpi_CartParms.h JAVAHmpi_CartComm.h JAVAHmpi_Constant.h JAVAHmpi_Comm.h JAVAHmpi_Count.h Error: Could not find class file for 'mpi.CartParms'. Makefile:2178: recipe for target 'mpi_CartParms.h' failed make[3]: *** [mpi_CartParms.h] Error 1 make[3]: *** Waiting for unfinished jobs Error: Could not find class file for 'mpi.MPI'. Makefile:2178: recipe for target 'mpi_MPI.h' failed make[3]: *** [mpi_MPI.h] Error 1 Error: Could not find class file for 'mpi.Comm'. Error: Could not find class file for 'mpi.Constant'. Error: Could not find class file for 'mpi.CartComm'. Makefile:2178: recipe for target 'mpi_Comm.h' failed make[3]: *** [mpi_Comm.h] Error 1 Makefile:2178: recipe for target 'mpi_Constant.h' failed make[3]: *** [mpi_Constant.h] Error 1 Error: Could not find class file for 'mpi.Count'. Makefile:2178: recipe for target 'mpi_CartComm.h' failed make[3]: *** [mpi_CartComm.h] Error 1 Makefile:2178: recipe for target 'mpi_Count.h' failed make[3]: *** [mpi_Count.h] Error 1 make[3]: Leaving directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi/mpi/java/java' Makefile:1720: recipe for target 'all-recursive' failed make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi/mpi/java' Makefile:3421: recipe for target 'all-recursive' failed make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10/ompi' Makefile:1873: recipe for target 'all-recursive' failed make: *** [all-recursive] Error 1 loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 171 loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 161 ls -l ompi/mpi/java/java/mpi/CartComm.class -rw-r--r-- 1 root root 2621 Apr 12 16:46 ompi/mpi/java/java/mpi/CartComm.class loki openmpi-3.0.1-Linux.x86_64.64_gcc_jdk-10 162 Java-9: === loki openmpi-3.0.1-Linux.x86_64.64_gcc 166 head -7 config.log | tail -1 $ ../openmpi-3.0.1/configure --prefix=/usr/local/openmpi-3.0.1_64_gcc --libdir=/usr/local/openmpi-3.0.1_64_gcc/lib64 --with-jdk-bindir=/usr/local/jdk-9/bin --with-jdk-headers=/usr/local/jdk-9/include JAVA_HOME=/usr/local/jdk-9 LDFLAGS=-m64 CC=gcc CXX=g++ FC=gfortran CFLAGS=-m64 CXXFLAGS=-m64 FCFLAGS=-m64 CPP=cpp CXXCPP=cpp --enable-mpi-cxx --enable-cxx-exceptions --enable-mpi-java --with-cuda=/usr/local/cuda --with-valgrind=/usr/local/valgrind --with-hwloc=internal --without-verbs --with-wrapper-cflags=-std=c11 -m64 --with-wrapper-cxxflags=-m64 --with-wrapper-fcflags=-m64 --enable-debug loki openmpi-3.0.1-Linux.x86_64.64_gcc 168 more log.make.Linux.x86_64.64_gcc Making all in config make[1]: Entering directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc/config' ... /JAVAH ...skipping make[3]: Entering directory '/export2/src/openmpi-3.0.1/openmpi-3.0.1-Linux.x86_64.64_gcc/ompi/mpi/java/java' JAVACMPI.class JAVAHmpi_MPI.h JAVAHmpi_CartParms.h JAVAHmpi_Comm.h JAVAHmpi_Count.h JAVAHmpi_Constant.h JAVAHmpi_CartComm.h Warning: The javah tool is planned to be removed in the next major JDK release. The tool has been superseded by the '-h' option added to javac in JDK 8. Users are recommended to migrate to using the javac '-h' option; see the javac man page for more information. ... I would be grateful, if somebody can fix the problem for Java-10. Do you need anything else? Thank you very much for any help in advance. Kind regards Siegmar smime.p7s Desc
