Re: [OMPI users] mpirun failure
you can use full path to mpirun, you can also set prefix $mpirun -prefix path/to/mpi/home -np . Lenny. On Sun, Oct 18, 2009 at 12:03 PM, Oswald Benedikt <benedikt.osw...@psi.ch>wrote: > Hi, thanks, that's what puzzled when I saw the reference to 1.3, but the > LD_LIBRARY_PATH was set to point > to the respective version, i.e. 1.3.2 or 1.3.3 and the 1.3 executables were > not in the PATH. > > Are there any other env variables or . files that need to be set ? > > Benedikt > > > -Original Message- > From: users-boun...@open-mpi.org on behalf of Ralph Castain > Sent: Sun 18.10.2009 6:04 > To: Open MPI Users > Subject: Re: [OMPI users] mpirun failure > > Looks to me like you may be picking up an earlier version when you > launch. At least, when I look at the error message, it says that it > came from a file in the openmpi-1.3 directory tree. Yet you say you > installed 1.3.2 and 1.3.3. > > Any chance your ld_library_path is pointing at the older version? > > > On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote: > > > Dear open-mpi users / developers, maybe this problem has been > > treated before but at least I can not find it: > > > > I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8). > > Compilation and installation of openmpi > > works well, also compilation and linking of users applications. > > However, when I want to start an application > > with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as > > follows: > > > > > > > > benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$ > > mpirun -np 2 ../../../hades3d/hades3d --option- > > file=mieScatteringDispersive.job > > [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 235 > > [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 261 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ > > orte/mca/ess/base/ess_base_nidmap.c at line 153 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 235 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ > > orte/mca/ess/base/ess_base_nidmap.c at line 153 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 261 > > > -- > > It looks like MPI_INIT failed for some reason; your parallel process > > is > > likely to abort. There are many reasons that a parallel process can > > fail during MPI_INIT; some of which are due to configuration or > > environment > > problems. This failure appears to be an internal failure; here's some > > additional information (which may only be relevant to an Open MPI > > developer): > > > > orte_grpcomm_modex failed > > --> Returned "Not found" (-13) instead of "Success" (0) > > > -- > > *** An error occurred in MPI_Init > > *** before MPI was initialized > > *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort) > > [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT > > completed successfully; not able to guarantee that all other > > processes were killed! > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/ess/env/ess_env_module.c at line 297 > > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > > mca/grpcomm/bad/grpcomm_bad_module.c at line 559 > > > -- > > mpirun has exited due to process rank 1 with PID 50794 on > > node benedikt-oswalds-macbook-pro.local exiting without calling > > "finalize". This may > > have caused other processes in the application to be > > terminated by signals sent by mpirun (as reported here). > > > -- > > > &
Re: [OMPI users] mpirun failure
Hi, thanks, that's what puzzled when I saw the reference to 1.3, but the LD_LIBRARY_PATH was set to point to the respective version, i.e. 1.3.2 or 1.3.3 and the 1.3 executables were not in the PATH. Are there any other env variables or . files that need to be set ? Benedikt -Original Message- From: users-boun...@open-mpi.org on behalf of Ralph Castain Sent: Sun 18.10.2009 6:04 To: Open MPI Users Subject: Re: [OMPI users] mpirun failure Looks to me like you may be picking up an earlier version when you launch. At least, when I look at the error message, it says that it came from a file in the openmpi-1.3 directory tree. Yet you say you installed 1.3.2 and 1.3.3. Any chance your ld_library_path is pointing at the older version? On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote: > Dear open-mpi users / developers, maybe this problem has been > treated before but at least I can not find it: > > I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8). > Compilation and installation of openmpi > works well, also compilation and linking of users applications. > However, when I want to start an application > with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as > follows: > > > > benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$ > mpirun -np 2 ../../../hades3d/hades3d --option- > file=mieScatteringDispersive.job > [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > mca/ess/env/ess_env_module.c at line 235 > [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > mca/ess/env/ess_env_module.c at line 261 > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ > orte/mca/ess/base/ess_base_nidmap.c at line 153 > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > mca/ess/env/ess_env_module.c at line 235 > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ > orte/mca/ess/base/ess_base_nidmap.c at line 153 > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > mca/ess/env/ess_env_module.c at line 261 > -- > It looks like MPI_INIT failed for some reason; your parallel process > is > likely to abort. There are many reasons that a parallel process can > fail during MPI_INIT; some of which are due to configuration or > environment > problems. This failure appears to be an internal failure; here's some > additional information (which may only be relevant to an Open MPI > developer): > > orte_grpcomm_modex failed > --> Returned "Not found" (-13) instead of "Success" (0) > -- > *** An error occurred in MPI_Init > *** before MPI was initialized > *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort) > [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT > completed successfully; not able to guarantee that all other > processes were killed! > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > mca/ess/env/ess_env_module.c at line 297 > [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] > ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ > mca/grpcomm/bad/grpcomm_bad_module.c at line 559 > -- > mpirun has exited due to process rank 1 with PID 50794 on > node benedikt-oswalds-macbook-pro.local exiting without calling > "finalize". This may > have caused other processes in the application to be > terminated by signals sent by mpirun (as reported here). > -- > > > Can anyone comment on this ? Is this a basic installation or path > problem ? > > openmpi 1.3 does not show this problem. > > Thanks, Benedikt > > > > > -- > Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, > Computational Accelerator Scientist > Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, >
Re: [OMPI users] mpirun failure
Looks to me like you may be picking up an earlier version when you launch. At least, when I look at the error message, it says that it came from a file in the openmpi-1.3 directory tree. Yet you say you installed 1.3.2 and 1.3.3. Any chance your ld_library_path is pointing at the older version? On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote: Dear open-mpi users / developers, maybe this problem has been treated before but at least I can not find it: I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8). Compilation and installation of openmpi works well, also compilation and linking of users applications. However, when I want to start an application with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as follows: benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$ mpirun -np 2 ../../../hades3d/hades3d --option- file=mieScatteringDispersive.job [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ mca/ess/env/ess_env_module.c at line 235 [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ mca/ess/env/ess_env_module.c at line 261 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ orte/mca/ess/base/ess_base_nidmap.c at line 153 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ mca/ess/env/ess_env_module.c at line 235 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/ orte/mca/ess/base/ess_base_nidmap.c at line 153 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ mca/ess/env/ess_env_module.c at line 261 -- It looks like MPI_INIT failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during MPI_INIT; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): orte_grpcomm_modex failed --> Returned "Not found" (-13) instead of "Success" (0) -- *** An error occurred in MPI_Init *** before MPI was initialized *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort) [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT completed successfully; not able to guarantee that all other processes were killed! [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ mca/ess/env/ess_env_module.c at line 297 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/ mca/grpcomm/bad/grpcomm_bad_module.c at line 559 -- mpirun has exited due to process rank 1 with PID 50794 on node benedikt-oswalds-macbook-pro.local exiting without calling "finalize". This may have caused other processes in the application to be terminated by signals sent by mpirun (as reported here). -- Can anyone comment on this ? Is this a basic installation or path problem ? openmpi 1.3 does not show this problem. Thanks, Benedikt -- Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, Computational Accelerator Scientist Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, benedikt.osw...@psi.ch , +41(0)56 310 32 12 "Passion is required for any great work, and for the Revolution passion and audacity are required in big doses.", Ernesto 'Che' Guevara, Letter to his parents. http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald -- ___ users mailing list us...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/users
[OMPI users] mpirun failure
Dear open-mpi users / developers, maybe this problem has been treated before but at least I can not find it: I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8). Compilation and installation of openmpi works well, also compilation and linking of users applications. However, when I want to start an application with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as follows: benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$ mpirun -np 2 ../../../hades3d/hades3d --option-file=mieScatteringDispersive.job [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/mca/ess/env/ess_env_module.c at line 235 [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/mca/ess/env/ess_env_module.c at line 261 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/orte/mca/ess/base/ess_base_nidmap.c at line 153 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/mca/ess/env/ess_env_module.c at line 235 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/orte/mca/ess/base/ess_base_nidmap.c at line 153 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/mca/ess/env/ess_env_module.c at line 261 -- It looks like MPI_INIT failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during MPI_INIT; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): orte_grpcomm_modex failed --> Returned "Not found" (-13) instead of "Success" (0) -- *** An error occurred in MPI_Init *** before MPI was initialized *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort) [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT completed successfully; not able to guarantee that all other processes were killed! [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/mca/ess/env/ess_env_module.c at line 297 [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1] ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/mca/grpcomm/bad/grpcomm_bad_module.c at line 559 -- mpirun has exited due to process rank 1 with PID 50794 on node benedikt-oswalds-macbook-pro.local exiting without calling "finalize". This may have caused other processes in the application to be terminated by signals sent by mpirun (as reported here). -- Can anyone comment on this ? Is this a basic installation or path problem ? openmpi 1.3 does not show this problem. Thanks, Benedikt -- Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch, Computational Accelerator Scientist Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse, benedikt.osw...@psi.ch, +41(0)56 310 32 12 "Passion is required for any great work, and for the Revolution passion and audacity are required in big doses.", Ernesto 'Che' Guevara, Letter to his parents. http://maxwell.psi.ch/amaswiki/index.php/User:BenediktOswald --
