subject:"Re\: \[OMPI users\] Problem with 'orted\: command not found'"

Re: [OMPI users] Problem with 'orted: command not found'

2016-05-03 Thread Maciek Lewiński

Thank you! I have set up my env paths at the end of the script and thanks
to you I just noticed that at the beginning of the bashrc script there's a
simple IF that returns when it's opened as non-interactive. I moved my
exports above it and it finally works. Again, thank you very much.

2016-05-03 3:19 GMT+02:00 Jeff Squyres (jsquyres) :

> Make sure you check that these paths are set for *non-interactive* logins.
>
>
> > On May 2, 2016, at 6:14 PM, Maciek Lewiński 
> wrote:
> >
> > I already had correct paths in .bashrc:
> >
> > export
> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/$USER/.openmpi/bin
> >
> > export
> LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/$USER/.openmpi/lib
> >
> > I can run mpi normally from slave1 so I'm sure they work. I also
> exported these paths in .profile just to be sure a moment before but it
> didn't work. Still the same error.
> >
> >
> >
> > 2016-05-02 23:40 GMT+02:00 Jeff Squyres (jsquyres) :
> > The key is this error:
> >
> > bash: orted: command not found
> >
> > Meaning: you need to set your PATH and LD_LIBRARY_PATH properly for
> non-interactive logins.  See
> https://www.open-mpi.org/faq/?category=running#adding-ompi-to-path.
> >
> >
> > > On May 2, 2016, at 5:36 PM, Maciek Lewiński 
> wrote:
> > >
> > > Hi, I'm having problem with Open MPI version 1.10.2.
> > > I've installed two virtual machines on VirtualBox, both are the same
> images of Ubuntu 12.04 64bit.
> > > Both have the same accounts, both have everything configured almost
> exactly the same.
> > > I have configured OMPI only with the --prefix to specify my location
> of install folder which is /home/$USER/.openmpi.
> > > Users on both machines are identical.
> > >
> > > On both machines running mpirun on one of the example programs work
> perfectly, on both machines I've added bin and lib to corresponding PATHs,
> env command ran on master and through ssh on slave1 gives these results:
> > > osboxes@osboxes:~/cloud$ env | grep PATH
> > >
> LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/osboxes/.openmpi/lib
> > >
> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/osboxes/.openmpi/bin
> > >
> > > On both hosts I have installed ssh which works, I've enabled
> passwordless connection, which again, works,
> > >
> > > I have created an NFS folder in which I hold the hello_c program from
> examples and hosts file that looks like this:
> > > 192.168.0.191master
> > > 192.168.0.190slave1
> > >
> > > The same two lines are placed in /etc/hosts for ssh to work.
> > >
> > > On both machines, running:
> > > osboxes@osboxes:~/cloud$ mpirun -np 1 ./hello_c
> > > Hello, world, I am 0 of 1, (Open MPI v1.10.2, package: Open MPI
> osboxes@osboxes Distribution, ident: 1.10.2, repo rev:
> v1.10.1-145-g799148f, Jan 21, 2016, 126)
> > >
> > > Works, even running this command on slave1 through ssh from master
> works as expected.
> > >
> > > Yet when I try to execute the following command I get the error:
> > > osboxes@osboxes:~/cloud$ mpirun -np 2 --hostfile hosts ./hello_c
> > > bash: orted: command not found
> > >
> --
> > > ORTE was unable to reliably start one or more daemons.
> > > This usually is caused by:
> > >
> > > * not finding the required libraries and/or binaries on
> > >   one or more nodes. Please check your PATH and LD_LIBRARY_PATH
> > >   settings, or configure OMPI with --enable-orterun-prefix-by-default
> > >
> > > * lack of authority to execute on one or more specified nodes.
> > >   Please verify your allocation and authorities.
> > >
> > > * the inability to write startup files into /tmp
> (--tmpdir/orte_tmpdir_base).
> > >   Please check with your sys admin to determine the correct location
> to use.
> > >
> > > *  compilation of the orted with dynamic libraries when static are
> required
> > >   (e.g., on Cray). Please check your configure cmd line and consider
> using
> > >   one of the contrib/platform definitions for your system type.
> > >
> > > * an inability to create a connection back to mpirun due to a
> > >   lack of common network interfaces and/or no route found between
> > >   them. Please check network connectivity (including firewalls
> > >   and network routing requirements).
> > >
> --
> > >
> > > The same happens when I use -host master,slave1 instead of --hostfile
> hosts. I'm slowly running out if ideas, I've tried anything I could find on
> the internet or OMPI FAQ, nothing seems to work. What am I doing wrong?
> > > ___
> > > users mailing list
> > > us...@open-mpi.org
> > > Subscription:

Re: [OMPI users] Problem with 'orted: command not found'

2016-05-02 Thread Gilles Gouaillardet

If OpenMPI is installed at the same path on every node, the easiest optin
is to re-configure with
--enable-mpirun-prefix-by-default
an other option is to use
`which mpirun` instead of mpirun
and yet an other option is to
mpirun --prefix=$USER/.openmpi

Cheers,

Gilles

On Tuesday, May 3, 2016, Maciek Lewiński  wrote:

> I already had correct paths in .bashrc:
>
> export
> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/$USER/.openmpi/bin
>
> export
> LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/$USER/.openmpi/lib
>
> I can run mpi normally from slave1 so I'm sure they work. I also exported
> these paths in .profile just to be sure a moment before but it didn't work.
> Still the same error.
>
>
>
> 2016-05-02 23:40 GMT+02:00 Jeff Squyres (jsquyres)  >:
>
>> The key is this error:
>>
>> bash: orted: command not found
>>
>> Meaning: you need to set your PATH and LD_LIBRARY_PATH properly for
>> non-interactive logins.  See
>> https://www.open-mpi.org/faq/?category=running#adding-ompi-to-path.
>>
>>
>> > On May 2, 2016, at 5:36 PM, Maciek Lewiński > > wrote:
>> >
>> > Hi, I'm having problem with Open MPI version 1.10.2.
>> > I've installed two virtual machines on VirtualBox, both are the same
>> images of Ubuntu 12.04 64bit.
>> > Both have the same accounts, both have everything configured almost
>> exactly the same.
>> > I have configured OMPI only with the --prefix to specify my location of
>> install folder which is /home/$USER/.openmpi.
>> > Users on both machines are identical.
>> >
>> > On both machines running mpirun on one of the example programs work
>> perfectly, on both machines I've added bin and lib to corresponding PATHs,
>> env command ran on master and through ssh on slave1 gives these results:
>> > osboxes@osboxes:~/cloud$ env | grep PATH
>> >
>> LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/osboxes/.openmpi/lib
>> >
>> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/osboxes/.openmpi/bin
>> >
>> > On both hosts I have installed ssh which works, I've enabled
>> passwordless connection, which again, works,
>> >
>> > I have created an NFS folder in which I hold the hello_c program from
>> examples and hosts file that looks like this:
>> > 192.168.0.191master
>> > 192.168.0.190slave1
>> >
>> > The same two lines are placed in /etc/hosts for ssh to work.
>> >
>> > On both machines, running:
>> > osboxes@osboxes:~/cloud$ mpirun -np 1 ./hello_c
>> > Hello, world, I am 0 of 1, (Open MPI v1.10.2, package: Open MPI
>> osboxes@osboxes Distribution, ident: 1.10.2, repo rev:
>> v1.10.1-145-g799148f, Jan 21, 2016, 126)
>> >
>> > Works, even running this command on slave1 through ssh from master
>> works as expected.
>> >
>> > Yet when I try to execute the following command I get the error:
>> > osboxes@osboxes:~/cloud$ mpirun -np 2 --hostfile hosts ./hello_c
>> > bash: orted: command not found
>> >
>> --
>> > ORTE was unable to reliably start one or more daemons.
>> > This usually is caused by:
>> >
>> > * not finding the required libraries and/or binaries on
>> >   one or more nodes. Please check your PATH and LD_LIBRARY_PATH
>> >   settings, or configure OMPI with --enable-orterun-prefix-by-default
>> >
>> > * lack of authority to execute on one or more specified nodes.
>> >   Please verify your allocation and authorities.
>> >
>> > * the inability to write startup files into /tmp
>> (--tmpdir/orte_tmpdir_base).
>> >   Please check with your sys admin to determine the correct location to
>> use.
>> >
>> > *  compilation of the orted with dynamic libraries when static are
>> required
>> >   (e.g., on Cray). Please check your configure cmd line and consider
>> using
>> >   one of the contrib/platform definitions for your system type.
>> >
>> > * an inability to create a connection back to mpirun due to a
>> >   lack of common network interfaces and/or no route found between
>> >   them. Please check network connectivity (including firewalls
>> >   and network routing requirements).
>> >
>> --
>> >
>> > The same happens when I use -host master,slave1 instead of --hostfile
>> hosts. I'm slowly running out if ideas, I've tried anything I could find on
>> the internet or OMPI FAQ, nothing seems to work. What am I doing wrong?
>> > ___
>> > users mailing list
>> > us...@open-mpi.org 
>> > Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users
>> > Link to this post:
>>

Re: [OMPI users] Problem with 'orted: command not found'

2016-05-02 Thread Jeff Squyres (jsquyres)

Make sure you check that these paths are set for *non-interactive* logins.


> On May 2, 2016, at 6:14 PM, Maciek Lewiński  wrote:
> 
> I already had correct paths in .bashrc:
> 
> export 
> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/$USER/.openmpi/bin
> 
> export LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/$USER/.openmpi/lib
> 
> I can run mpi normally from slave1 so I'm sure they work. I also exported 
> these paths in .profile just to be sure a moment before but it didn't work. 
> Still the same error.
> 
> 
> 
> 2016-05-02 23:40 GMT+02:00 Jeff Squyres (jsquyres) :
> The key is this error:
> 
> bash: orted: command not found
> 
> Meaning: you need to set your PATH and LD_LIBRARY_PATH properly for 
> non-interactive logins.  See 
> https://www.open-mpi.org/faq/?category=running#adding-ompi-to-path.
> 
> 
> > On May 2, 2016, at 5:36 PM, Maciek Lewiński  
> > wrote:
> >
> > Hi, I'm having problem with Open MPI version 1.10.2.
> > I've installed two virtual machines on VirtualBox, both are the same images 
> > of Ubuntu 12.04 64bit.
> > Both have the same accounts, both have everything configured almost exactly 
> > the same.
> > I have configured OMPI only with the --prefix to specify my location of 
> > install folder which is /home/$USER/.openmpi.
> > Users on both machines are identical.
> >
> > On both machines running mpirun on one of the example programs work 
> > perfectly, on both machines I've added bin and lib to corresponding PATHs, 
> > env command ran on master and through ssh on slave1 gives these results:
> > osboxes@osboxes:~/cloud$ env | grep PATH
> > LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/osboxes/.openmpi/lib
> > PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/osboxes/.openmpi/bin
> >
> > On both hosts I have installed ssh which works, I've enabled passwordless 
> > connection, which again, works,
> >
> > I have created an NFS folder in which I hold the hello_c program from 
> > examples and hosts file that looks like this:
> > 192.168.0.191master
> > 192.168.0.190slave1
> >
> > The same two lines are placed in /etc/hosts for ssh to work.
> >
> > On both machines, running:
> > osboxes@osboxes:~/cloud$ mpirun -np 1 ./hello_c
> > Hello, world, I am 0 of 1, (Open MPI v1.10.2, package: Open MPI 
> > osboxes@osboxes Distribution, ident: 1.10.2, repo rev: 
> > v1.10.1-145-g799148f, Jan 21, 2016, 126)
> >
> > Works, even running this command on slave1 through ssh from master works as 
> > expected.
> >
> > Yet when I try to execute the following command I get the error:
> > osboxes@osboxes:~/cloud$ mpirun -np 2 --hostfile hosts ./hello_c
> > bash: orted: command not found
> > --
> > ORTE was unable to reliably start one or more daemons.
> > This usually is caused by:
> >
> > * not finding the required libraries and/or binaries on
> >   one or more nodes. Please check your PATH and LD_LIBRARY_PATH
> >   settings, or configure OMPI with --enable-orterun-prefix-by-default
> >
> > * lack of authority to execute on one or more specified nodes.
> >   Please verify your allocation and authorities.
> >
> > * the inability to write startup files into /tmp 
> > (--tmpdir/orte_tmpdir_base).
> >   Please check with your sys admin to determine the correct location to use.
> >
> > *  compilation of the orted with dynamic libraries when static are required
> >   (e.g., on Cray). Please check your configure cmd line and consider using
> >   one of the contrib/platform definitions for your system type.
> >
> > * an inability to create a connection back to mpirun due to a
> >   lack of common network interfaces and/or no route found between
> >   them. Please check network connectivity (including firewalls
> >   and network routing requirements).
> > --
> >
> > The same happens when I use -host master,slave1 instead of --hostfile 
> > hosts. I'm slowly running out if ideas, I've tried anything I could find on 
> > the internet or OMPI FAQ, nothing seems to work. What am I doing wrong?
> > ___
> > users mailing list
> > us...@open-mpi.org
> > Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users
> > Link to this post: 
> > http://www.open-mpi.org/community/lists/users/2016/05/29068.php
> 
> 
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to: 
> http://www.cisco.com/web/about/doing_business/legal/cri/
> 
> ___
> users mailing list
> us...@open-mpi.org
> Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post: 
>

Re: [OMPI users] Problem with 'orted: command not found'

2016-05-02 Thread Maciek Lewiński

I already had correct paths in .bashrc:

export
PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/$USER/.openmpi/bin

export
LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/$USER/.openmpi/lib

I can run mpi normally from slave1 so I'm sure they work. I also exported
these paths in .profile just to be sure a moment before but it didn't work.
Still the same error.



2016-05-02 23:40 GMT+02:00 Jeff Squyres (jsquyres) :

> The key is this error:
>
> bash: orted: command not found
>
> Meaning: you need to set your PATH and LD_LIBRARY_PATH properly for
> non-interactive logins.  See
> https://www.open-mpi.org/faq/?category=running#adding-ompi-to-path.
>
>
> > On May 2, 2016, at 5:36 PM, Maciek Lewiński 
> wrote:
> >
> > Hi, I'm having problem with Open MPI version 1.10.2.
> > I've installed two virtual machines on VirtualBox, both are the same
> images of Ubuntu 12.04 64bit.
> > Both have the same accounts, both have everything configured almost
> exactly the same.
> > I have configured OMPI only with the --prefix to specify my location of
> install folder which is /home/$USER/.openmpi.
> > Users on both machines are identical.
> >
> > On both machines running mpirun on one of the example programs work
> perfectly, on both machines I've added bin and lib to corresponding PATHs,
> env command ran on master and through ssh on slave1 gives these results:
> > osboxes@osboxes:~/cloud$ env | grep PATH
> > LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/osboxes/.openmpi/lib
> >
> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/osboxes/.openmpi/bin
> >
> > On both hosts I have installed ssh which works, I've enabled
> passwordless connection, which again, works,
> >
> > I have created an NFS folder in which I hold the hello_c program from
> examples and hosts file that looks like this:
> > 192.168.0.191master
> > 192.168.0.190slave1
> >
> > The same two lines are placed in /etc/hosts for ssh to work.
> >
> > On both machines, running:
> > osboxes@osboxes:~/cloud$ mpirun -np 1 ./hello_c
> > Hello, world, I am 0 of 1, (Open MPI v1.10.2, package: Open MPI
> osboxes@osboxes Distribution, ident: 1.10.2, repo rev:
> v1.10.1-145-g799148f, Jan 21, 2016, 126)
> >
> > Works, even running this command on slave1 through ssh from master works
> as expected.
> >
> > Yet when I try to execute the following command I get the error:
> > osboxes@osboxes:~/cloud$ mpirun -np 2 --hostfile hosts ./hello_c
> > bash: orted: command not found
> >
> --
> > ORTE was unable to reliably start one or more daemons.
> > This usually is caused by:
> >
> > * not finding the required libraries and/or binaries on
> >   one or more nodes. Please check your PATH and LD_LIBRARY_PATH
> >   settings, or configure OMPI with --enable-orterun-prefix-by-default
> >
> > * lack of authority to execute on one or more specified nodes.
> >   Please verify your allocation and authorities.
> >
> > * the inability to write startup files into /tmp
> (--tmpdir/orte_tmpdir_base).
> >   Please check with your sys admin to determine the correct location to
> use.
> >
> > *  compilation of the orted with dynamic libraries when static are
> required
> >   (e.g., on Cray). Please check your configure cmd line and consider
> using
> >   one of the contrib/platform definitions for your system type.
> >
> > * an inability to create a connection back to mpirun due to a
> >   lack of common network interfaces and/or no route found between
> >   them. Please check network connectivity (including firewalls
> >   and network routing requirements).
> >
> --
> >
> > The same happens when I use -host master,slave1 instead of --hostfile
> hosts. I'm slowly running out if ideas, I've tried anything I could find on
> the internet or OMPI FAQ, nothing seems to work. What am I doing wrong?
> > ___
> > users mailing list
> > us...@open-mpi.org
> > Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users
> > Link to this post:
> http://www.open-mpi.org/community/lists/users/2016/05/29068.php
>
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
> ___
> users mailing list
> us...@open-mpi.org
> Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post:
> http://www.open-mpi.org/community/lists/users/2016/05/29069.php

Re: [OMPI users] Problem with 'orted: command not found'

2016-05-02 Thread Jeff Squyres (jsquyres)

The key is this error:

bash: orted: command not found

Meaning: you need to set your PATH and LD_LIBRARY_PATH properly for 
non-interactive logins.  See 
https://www.open-mpi.org/faq/?category=running#adding-ompi-to-path.


> On May 2, 2016, at 5:36 PM, Maciek Lewiński  wrote:
> 
> Hi, I'm having problem with Open MPI version 1.10.2.
> I've installed two virtual machines on VirtualBox, both are the same images 
> of Ubuntu 12.04 64bit.
> Both have the same accounts, both have everything configured almost exactly 
> the same.
> I have configured OMPI only with the --prefix to specify my location of 
> install folder which is /home/$USER/.openmpi.
> Users on both machines are identical.
> 
> On both machines running mpirun on one of the example programs work 
> perfectly, on both machines I've added bin and lib to corresponding PATHs, 
> env command ran on master and through ssh on slave1 gives these results:
> osboxes@osboxes:~/cloud$ env | grep PATH
> LD_LIBRARY_PATH=:/usr/local/lib:/usr/local/lib:/home/osboxes/.openmpi/lib
> PATH=/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/bin:/usr/local/bin:/home/osboxes/.openmpi/bin
> 
> On both hosts I have installed ssh which works, I've enabled passwordless 
> connection, which again, works,
> 
> I have created an NFS folder in which I hold the hello_c program from 
> examples and hosts file that looks like this:
> 192.168.0.191master
> 192.168.0.190slave1
> 
> The same two lines are placed in /etc/hosts for ssh to work.
> 
> On both machines, running:
> osboxes@osboxes:~/cloud$ mpirun -np 1 ./hello_c
> Hello, world, I am 0 of 1, (Open MPI v1.10.2, package: Open MPI 
> osboxes@osboxes Distribution, ident: 1.10.2, repo rev: v1.10.1-145-g799148f, 
> Jan 21, 2016, 126)
> 
> Works, even running this command on slave1 through ssh from master works as 
> expected.
> 
> Yet when I try to execute the following command I get the error: 
> osboxes@osboxes:~/cloud$ mpirun -np 2 --hostfile hosts ./hello_c
> bash: orted: command not found
> --
> ORTE was unable to reliably start one or more daemons.
> This usually is caused by:
> 
> * not finding the required libraries and/or binaries on
>   one or more nodes. Please check your PATH and LD_LIBRARY_PATH
>   settings, or configure OMPI with --enable-orterun-prefix-by-default
> 
> * lack of authority to execute on one or more specified nodes.
>   Please verify your allocation and authorities.
> 
> * the inability to write startup files into /tmp (--tmpdir/orte_tmpdir_base).
>   Please check with your sys admin to determine the correct location to use.
> 
> *  compilation of the orted with dynamic libraries when static are required
>   (e.g., on Cray). Please check your configure cmd line and consider using
>   one of the contrib/platform definitions for your system type.
> 
> * an inability to create a connection back to mpirun due to a
>   lack of common network interfaces and/or no route found between
>   them. Please check network connectivity (including firewalls
>   and network routing requirements).
> --
> 
> The same happens when I use -host master,slave1 instead of --hostfile hosts. 
> I'm slowly running out if ideas, I've tried anything I could find on the 
> internet or OMPI FAQ, nothing seems to work. What am I doing wrong?
> ___
> users mailing list
> us...@open-mpi.org
> Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/users
> Link to this post: 
> http://www.open-mpi.org/community/lists/users/2016/05/29068.php


-- 
Jeff Squyres
jsquy...@cisco.com
For corporate legal information go to: 
http://www.cisco.com/web/about/doing_business/legal/cri/

Re: [OMPI users] Problem with 'orted: command not found'

Re: [OMPI users] Problem with 'orted: command not found'

Re: [OMPI users] Problem with 'orted: command not found'

Re: [OMPI users] Problem with 'orted: command not found'

Re: [OMPI users] Problem with 'orted: command not found'

5 matches

Site Navigation

Mail list logo

Footer information