Hi Piret,
> As the quad dump failed I went with an option to select list of named graphs
> we needed to save from corrupted database and I am making dumps of those
> graphs one by one using procedure specified here
> http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VirtRDFDatasetDump.
> I uploaded to new fresh database 1745454 named graphs from old database
> using bulk loader. This is just a small amount of overall named graphs still
> need loading to new database. After uploading those graphs with bulk loader I
> started a process to insert some named graphs through our java process using
> query "SPARQL INSERT DATA { GRAPH <named_graph> { ... }}". After processing
> 233270 named graphs I got the same error in the clean database:
>
> COL..: Insert stopped because out of seg data here or elsewhere host 0
> key RDF_QUAD_SP slice 0
>
> The clean database file size is only 4G. Made an integrity check after that
> and it passed. Additionally made crash dump and restore successfully, but
> after starting java process again I still get the same error. The differences
> with other named graphs I inserted and the named graphs inserted through java
> process is that java process ones contain multiple plain literal object
> values with some UTF-8 letters 'ÄÖÜÕ', for example (test values presented):
>
> <https://test.ee/organizations/ee-1234567890>
> <http://purl.org/goodrelations/v1#legalName> "EXAMPLE TEST OÜ" .
>
> And multiple decimal values, for example (test values presented):
>
> <https://test.ee/amounts/total> <http://schema.org/amount>
> "7.77"^^<http://www.w3.org/2001/XMLSchema#decimal> .
>
> Integrity check passes and no errors are logged to virtuoso.log file. The
> database starts up correctly and select queries work just fine. Connection
> with virtuoso is made with url
> "jdbc:virtuoso://<ip_address>:1111/CHARSET=UTF-8".
>
> I was not able to create a debian package with debug binary with symbols in
> place using debian/rules for compiling. Can someone maybe give me some
> guidance on where to correctly add option --with-debug and CFLAGS variable?
>
Please use the following environment for Debian, else the deb_build tool will
strip the binaries:
export DEB_BUILD_OPTIONS="nostrip noopt”
next edit the debian/rules file and add the following line to the
DEB_CONFIGURE_EXTRA_FLAGS= setting:
—with-debug \
then do a clean build of the VOS tree, and you should end up with binaries that
have full debug symbols.
Patrick
---
Patrick van Kleef
Program Manager
OpenLink Software
http://www.openlinksw.com/
http://twitter.com/openlink/
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