Am 17. Dezember 2011 17:56 schrieb rp <rakheep...@gmail.com>: > Below is the CMakeError.log file , as mentioned using -DWITH_FFTW=NO > will lead to reduced functionality , will this option disable certain > tools.Again if I try > -DFFTW3_LIBRARY='/path/to/libfftw3.so' with ./build.sh , do I need to > replace /path/to with the place where fftw library files are > installed. Yes!
In your last email, it said fftw was found, but some went wrong later. Please post the end of that CMakeError.log. Disabling fftw will only remove the ability to calculate correlation functions. > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ > CMakeTmp' > make[1]: *** [cmTryCompileExec] Error 1 > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ > CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rakhee/src/tools/CMakeFiles/ > CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ > CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3.a failed with the following output: > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': > mapflags.c:(.text+0x440): undefined reference to `log' > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': > trig.c:(.text+0x205): undefined reference to `sincos' > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rakhee/src/tools/CMakeFiles/ > CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3.a failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': > mapflags.c:(.text+0x440): undefined reference to `log' > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': > trig.c:(.text+0x205): undefined reference to `sincos' > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3.a failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': > mapflags.c:(.text+0x440): undefined reference to `log' > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': > trig.c:(.text+0x205): undefined reference to `sincos' > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3.a failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': > mapflags.c:(.text+0x440): undefined reference to `log' > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': > trig.c:(.text+0x205): undefined reference to `sincos' > collect2: ld returned 1 exit status > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make[1]: *** [cmTryCompileExec] Error 1 > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3.a failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rakhee/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': > mapflags.c:(.text+0x440): undefined reference to `log' > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': > trig.c:(.text+0x205): undefined reference to `sincos' > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rakhee/src/tools/CMakeFiles/ > CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3.a failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr/local/lib/libfftw3.a > /usr/local/lib/libfftw3.a(mapflags.o): In function `fftw_mapflags': > mapflags.c:(.text+0x440): undefined reference to `log' > /usr/local/lib/libfftw3.a(trig.o): In function `real_cexp': > trig.c:(.text+0x205): undefined reference to `sincos' > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /home/rakhee/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthreads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > make[1]: *** [cmTryCompileExec] Error 1 > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /path/to/ > libfftw3.so failed with the following output: > Change Dir: /home/rp/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/make "cmTryCompileExec/fast" > /usr/bin/make -f CMakeFiles/cmTryCompileExec.dir/build.make CMakeFiles/ > cmTryCompileExec.dir/build > make[1]: Entering directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /home/rp/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Modules/CheckFunctionExists.c > make[1]: *** No rule to make target `/path/to/libfftw3.so', needed by > `cmTryCompileExec'. Stop. > make[1]: Leaving directory `/home/rp/src/tools/CMakeFiles/CMakeTmp' > make: *** [cmTryCompileExec/fast] Error 2 > > > > Thank you > Rakhee > > > > On Dec 17, 5:12 pm, Christoph Junghans <jungh...@votca.org> wrote: >> Can you please post /home/rp/src/tools/CMakeFiles/CMakeError.log? >> >> Am 17. Dezember 2011 13:22 schrieb rp <rakheep...@gmail.com>: >> >> >> >> >> >> >> >> > I installed all dependencies and ,get an error as below .Can you tell >> > me where am I going wrong. >> >> > checking for module 'fftw3' >> > -- found fftw3, version 3.3 >> > -- Found FFTW3: /usr/local/lib/libfftw3.a >> > -- Looking for fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a >> > -- Looking for fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a - not >> > found >> > CMake Error at CMakeModules/FindFFTW3.cmake:43 (message): >> > Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.a, take a >> > look >> > at the error message in /home/rp/src/tools/CMakeFiles/CMakeError.log >> > to >> > find out what was going wrong. If you don't have pkg-config >> > installed you >> > will most likely have to set FFTW3_LIBRARY by hand (i.e. >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so') ! >> > Call Stack (most recent call first): >> > src/libtools/CMakeLists.txt:11 (find_package) >> >> > -- Configuring incomplete, errors occurred! >> >> > Thanks, I appreciate >> >> > On Dec 16, 11:24 am, Christoph Junghans <jungh...@votca.org> wrote: >> >> Please read: >> >> <http://code.google.com/p/votca/wiki/Installing#From_Source> >> >> >> As described there, you need to add: >> >> -DEXTERNAL_BOOST=OFF to the commandline of build.sh, e.g. >> >> >> ./build.sh ....-DEXTERNAL_BOOST=OFF .... tools csg >> >> >> Alternatively, you could install boost and its dev package, see: >> >> <http://code.google.com/p/votca/wiki/Dependencies> >> >> >> Christoph >> >> >> Am 15. Dezember 2011 23:25 schrieb rp <rakheep...@gmail.com>: >> >> >> > Following my previous message I reinstalled cmake and tried the steps >> >> > again to configure votca, this provides me with a different error as >> >> > below >> >> > Looking for sqrt in m - found-- Could NOT find BoostCMake Error at src/ >> >> > CMakeLists.txt:5 (message): Boost not found, make sure you have also >> >> > installed boost and it's dev package or use our internal replacement >> >> > set -DEXTERNAL_BOOST=OFF >> >> >> > -- Configuring incomplete, errors occurred! >> >> > Can someone tell me how can I turn DEEXTERNAL_BOOST=OFF >> >> > Thanks >> >> >> > On Dec 15, 10:35 pm, rp <rakheep...@gmail.com> wrote: >> >> >> This is what I get after the command line >> >> >> >> + shift >> >> >> + [[ -prefix = -* ]] >> >> >> + [[ -prefix = --*=* ]] >> >> >> + [[ -prefix = -[^-]?* ]] >> >> >> + [[ -prefix = -[jpD]* ]] >> >> >> + set -- -p refix --latest tools csg >> >> >> + case $1 in >> >> >> + prefix=refix >> >> >> + shift 2 >> >> >> + [[ --latest = -* ]] >> >> >> + [[ --latest = --*=* ]] >> >> >> + [[ --latest = -[^-]?* ]] >> >> >> + case $1 in >> >> >> + rel=1.2.1 >> >> >> + shift >> >> >> + [[ tools = -* ]] >> >> >> + version_check -q >> >> >> ++ get_version ./build.sh >> >> >> ++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .*$/ >> >> >> \1/p' ./build.sh >> >> >> ++ sed -n '$p' >> >> >> + old_version=1.7.8 >> >> >> + '[' -q = -q ']' >> >> >> ++ get_webversion -q >> >> >> ++ local version >> >> >> ++ '[' -q = -q ']' >> >> >> +++ wget -qO-http://votca.googlecode.com/hg/build.sh >> >> >> +++ get_version >> >> >> +++ sed -ne 's/^#version[[:space:]]*\([^[:space:]]*\)[[:space:]]*-- .* >> >> >> $/\1/p' >> >> >> +++ sed -n '$p' >> >> >> ++ version=1.7.8 >> >> >> ++ echo 1.7.8 >> >> >> + new_version=1.7.8 >> >> >> + '[' -q = -q ']' >> >> >> + '[' -q = -q ']' >> >> >> + expr 1.7.8 '<' 1.7.8 >> >> >> + return 1 >> >> >> + [[ -z tools ]] >> >> >> + [[ -z refix ]] >> >> >> + [[ refix = *WHERE/TO/INSTALL/VOTCA* ]] >> >> >> + [[ refix = /* ]] >> >> >> + die 'prefix has to be a global path (should start with a '\''/'\'')' >> >> >> + [[ -n prefix has to be a global path (should start with a '/') ]] >> >> >> + cecho RED 'prefix has to be a global path (should start with a >> >> >> '\''/'\'')' >> >> >> + local opts color 'colors=BLUE CYAN CYANN GREEN RED PURP' >> >> >> + [[ RED = -?* ]] >> >> >> + [[ -z prefix has to be a global path (should start with a '/') ]] >> >> >> + is_in RED 'BLUE CYAN CYANN GREEN RED PURP' >> >> >> + [[ -z RED ]] >> >> >> + [[ -z BLUE CYAN CYANN GREEN RED PURP ]] >> >> >> + [[ BLUE CYAN CYANN GREEN RED PURP = *\ \R\E\D\ * ]] >> >> >> + color='' >> >> >> + shift >> >> >> + echo -n '' >> >> >> + echo -ne 'prefix has to be a global path (should start with a >> >> >> '\''/'\'')' >> >> >> prefix has to be a global path (should start with a '/')+ echo '' >> >> >> >> + exit 1 >> >> >> >> Thanks for your time. I appreciate >> >> >> >> On Dec 15, 10:00 pm, Christoph Junghans <jungh...@votca.org> wrote: >> >> >> >> > Just run: >> >> >> > $ ./build.sh --debug -prefix ${prefix} --latest tools csg >> >> >> >> > Am 15. Dezember 2011 19:46 schrieb rp <rakheep...@gmail.com>: >> >> >> >> > > This is cmake 2.8.6 and I am installing votca in Ubuntu11.10. After >> >> >> > > installing cmake there is no error . >> >> >> >> > > Where should I add the debug option , please explain >> >> >> >> > > I am installing votca-csg-1.2.1 . I want to make this >> >> >> > > clarification , >> >> >> > > I was using REDhat linux previously , now I am trying to do this in >> >> >> > > Ubuntu .I read the Votca installation page and this says Ubuntu is >> >> >> > > still in development . I am sorry if my question is not clear. >> >> >> > > I appreciate your help >> >> >> > > Thanks >> >> >> > > On Dec 15, 7:50 pm, Christoph Junghans <jungh...@votca.org> wrote: >> >> >> > >> Hi rp, >> >> >> >> > >> which version of cmake is it? >> >> >> > >> $cmake --version >> >> >> >> > >> Please add the '--debug' option and attach the output. >> >> >> >> > >> Cheers, >> >> >> >> > >> Christoph >> >> >> >> > >> Am 15. Dezember 2011 11:42 schrieb rp <rakheep...@gmail.com>: >> >> >> >> > >> > Dear Users,I get the following error while installing "cmake not >> >> >> > >> > found" , below are some lines. Then I installed cmake and tried >> >> >> > >> > again >> >> >> > >> > so this send me the error as prefix shoudl start with / as this >> >> >> > >> > is >> >> >> > >> > global path . I used as ./build.sh -prefix ${prefix} --latest >> >> >> > >> > tools >> >> >> > >> > csg >> >> >> >> > >> > Using 9 jobs for makeWorking on toolsDownload tarball votca- >> >> >> > >> > tools-1.2.1.tar.gz >> >> >> > >> > fromhttp://votca.googlecode.com/files/votca-tools-1.2.1.tar.gz--2011-12-15 >> >> >> > >> > 13:26:17-- http://votca.googlecode.com/files/votca- >> >> >> > >> > tools-1.2.1.tar.gzResolving votca.googlecode.com... >> >> >> > >> > 74.125.65.82Connecting to >> >> >> > >> > votca.googlecode.com|74.125.65.82|:80... >> >> >> > >> > connected.HTTP request sent, awaiting response... 200 OKLength: >> >> >> > >> > 961500 >> >> >> > >> > (939K) [application/x-gzip]Saving to: `votca-tools-1.2.1.tar.gz' >> >> >> > >> > 100%[======================================>] 961,500 >> >> >> > >> > 2.16M/s in >> >> >> > >> > 0.4s >> >> >> > >> > 2011-12-15 13:26:18 (2.16 MB/s) - `votca-tools-1.2.1.tar.gz' >> >> >> > >> > saved >> >> >> > >> > [961500/961500] >> >> >> > >> > cmake not found >> >> >> >> > >> > Thanks for any suggestions >> >> >> > >> > On Nov 17, 4:17 pm, Marc Segovia <marcsego...@gmail.com> wrote: >> >> >> > >> >> Hi >> >> >> >> > >> >> Provided you have dependecies fine, follow the steps >> >> >> >> > >> >> prefix=WHERE/TO/INSTALL/VOTCA >> >> >> > >> >> mkdir -p ${prefix}/src >> >> >> > >> >> cd ${prefix}/src >> >> >> > >> >> wgethttp://votca.googlecode.com/hg/build.sh >> >> >> > >> >> chmod +x build.sh >> >> >> > >> >> ./build.sh --prefix ${prefix} tools csg >> >> >> >> > >> >> maybe you can add gromacs on last line, like this >> >> >> >> > >> >> ./build.sh --prefix ${prefix} gromacs tools csg >> >> >> >> > >> >> regards >> >> >> > >> >> Marc >> >> >> > >> >> Universidad de la Republica Uruguay >> >> >> >> > >> >> On Thu, Nov 17, 2011 at 7:01 PM, rp <rakheep...@gmail.com> >> >> >> > >> >> wrote: >> >> >> > >> >> > Yes I have seen this installation page . I downloaded Votca >> >> >> > >> >> > and would >> >> >> > >> >> > like to know how should I go about installing thisin a linux >> >> >> > >> >> > box or in >> >> >> > >> >> > linux cluster. >> >> >> >> > >> >> > Thanks >> >> >> >> > >> >> > On Nov 17, 3:38 pm, Konstantin Koschke >> >> >> > >> >> > <konstantin.kosc...@gmail.com> >> >> >> > >> >> > wrote: >> >> >> > >> >> >> On Thu, Nov 17, 2011 at 8:22 PM, rp <rakheep...@gmail.com> >> >> >> > >> >> >> wrote: >> >> >> > >> >> >> > Can you send to instructions to install votca in linux. >> >> >> >> > >> >> >> > Thanks for help >> >> >> >> > >> >> >> > -- >> >> >> > >> >> >> > You received this message because you are subscribed to >> >> >> > >> >> >> > the Google Groups "votca" group. >> >> >> > >> >> >> > To post to this group, send email to >> >> >> > >> >> >> > votca@googlegroups.com. >> >> >> > >> >> >> > To unsubscribe from this group, send email to >> >> >> > >> >> >> > votca+unsubscr...@googlegroups.com. >> >> >> > >> >> >> > For more options, visit this group >> >> >> > >> >> >> > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> > >> >> >> Dear rp, >> >> >> >> > >> >> >> please be a bit more precise with your problem. >> >> >> >> > >> >> >> Did you try >> >> >> > >> >> >> followinghttp://code.google.com/p/votca/wiki/Installing? >> >> >> >> > >> >> >> cheers, >> >> >> > >> >> >> konstantin >> >> >> >> > >> >> > -- >> >> >> > >> >> > You received this message because you are subscribed to the >> >> >> > >> >> > Google Groups "votca" group. >> >> >> > >> >> > To post to this group, send email to votca@googlegroups.com. >> >> >> > >> >> > To unsubscribe from this group, send email to >> >> >> > >> >> > votca+unsubscr...@googlegroups.com. >> >> >> > >> >> > For more options, visit this group >> >> >> > >> >> > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> > >> > -- >> >> >> > >> > You received this message because you are subscribed to the >> >> >> > >> > Google Groups "votca" group. >> >> >> > >> > To post to this group, send email to votca@googlegroups.com. >> >> >> > >> > To unsubscribe from this group, send email to >> >> >> > >> > votca+unsubscr...@googlegroups.com. >> >> >> > >> > For more options, visit this group >> >> >> > >> > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> > >> -- >> >> >> > >> Christoph Junghans >> >> >> > >> Web:http://www.compphys.de >> >> >> >> > > -- >> >> >> > > You received this message because you are subscribed to the Google >> >> >> > > Groups "votca" group. >> >> >> > > To post to this group, send email to votca@googlegroups.com. >> >> >> > > To unsubscribe from this group, send email to >> >> >> > > votca+unsubscr...@googlegroups.com. >> >> >> > > For more options, visit this group >> >> >> > > athttp://groups.google.com/group/votca?hl=en. >> >> >> >> > -- >> >> >> > Christoph Junghans >> >> >> > Web:http://www.compphys.de >> >> >> > -- >> >> > You received this message because you are subscribed to the Google >> >> > Groups "votca" group. >> >> > To post... >> >> read more » > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to votca@googlegroups.com. > To unsubscribe from this group, send email to > votca+unsubscr...@googlegroups.com. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. > -- Christoph Junghans Web: http://www.compphys.de -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to votca@googlegroups.com. To unsubscribe from this group, send email to votca+unsubscr...@googlegroups.com. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
