[Wien] request

2014-02-06 Thread Saleem Ayaz
Dear users 
 I run the scf for spin polarize calculation of Nd3Si1.25Se7 using GGA+U. 
I used the command runsp_lapw -p -ec 0.1 -orb and converged the energy. The 
calculations are completed but Nd3Si1.25Se7.energyup and  Nd3Si1.25Se7.energydn 
are empty. 
Please help me what is the problem.___
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Re: [Wien] showing rhombohedral in hexagonal symmetry

2014-02-06 Thread Stefaan Cottenier



I want to make a struct file for a rhombohedral compound but with
hexagonal symmetry. How can i do that?
the positions in rhomboherdral are (0 0 0) (2/9 2/9 2/9) (7/9 7/9 7/9)
with 166-R3m
the equivalent positions by using rhom2hex are (0 0 0) (0 0 0.22) (0 0
0.77) with H space group, with this positions WIEN2K suggest 183 (P 6 m
m) space group which seems it is not correct because i think in regard
to crystallography, the number of atom during the conversion from
rhombohedral to hexagonal may change.


Sure, the number of positions is three times larger in the hexagonal 
setting, but these are symmetry-related.


Sm has 1a and 2c positions occupied in the rhombohedral setting (x=2/9), 
and 3a and 6c in the hexagonal setting (z=2/9). rhomb2hex and hex2rhomb 
make the correct conversions, but the symmetry-related positions have to 
be added manually.


Compare:

http://www.cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=rhombohedral

http://www.cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal

(mind the three translations under the word 'coordinates', which bring 
the 2 specified positions to 6)


The case.struct which you search for, is pasted hereafter.

Stefaan


blebleble
H   LATTICE,NONEQUIV.ATOMS   2  166 R-3m
MODE OF CALC=RELA unit=bohr
  6.856115  6.856115 49.573186 90.00 90.00120.00
ATOM  -1: X=0. Y=0. Z=0.
  MULT= 3  ISPLIT=15
  -1: X=0.6667 Y=0. Z=0.
  -1: X=0. Y=0.6667 Z=0.6667
Sm NPT=  781  R0=.1 RMT=   2.5   Z:  62.0
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -2: X=0. Y=0. Z=0.
  MULT= 6  ISPLIT=15
  -2: X=0.6667 Y=0. Z=0.5556
  -2: X=0. Y=0.6667 Z=0.8889
  -2: X=0. Y=0. Z=0.7778
  -2: X=0.6667 Y=0. Z=0.
  -2: X=0. Y=0.6667 Z=0.
Sm NPT=  781  R0=.1 RMT=   2.5   Z:  62.0
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
   0  NUMBER OF SYMMETRY OPERATIONS






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Re: [Wien] request

2014-02-06 Thread tran

Hi,

For a parallel calculation (-p), the orbitals energies are printed
in case.energyup_1, case.energyup_2, etc. (the same for dn).


On Thu, 6 Feb 2014, Saleem Ayaz wrote:


Dear users 
 I run the scf for spin polarize calculation of Nd3Si1.25Se7 using GGA+U. 
I used the command runsp_lapw -p -ec 0.1 -orb and converged the energy. The 
calculations
are completed but Nd3Si1.25Se7.energyup and  Nd3Si1.25Se7.energydn are empty. 
Please help me what is the problem.

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Re: [Wien] mBJ calculation stops after 2 cycles

2014-02-06 Thread Pascal BOULET

I forgot to mention that I tried twice the calculation and I got the same 
result. So, it does not seem to be an accidental failure.

Second, I checked the lcore.def file: all the files mentioned in there exist 
and are not empty. It contains the following:

 5,'MS.inc', 'old','formatted',0
 6,'MS.outputc','unknown','formatted',0
 8,'MS.vsp','old','formatted',0
 9,'MS.clmcor', 'unknown','formatted',0
19,'MS.vns','unknown','formatted',0
20,'MS.struct',  'old','formatted',0 
21,'MS.scfc',   'unknown','formatted',0
28,'MS.vrespcor',   'unknown','formatted',0
29,'MS.corewf',   'unknown','formatted',0
83,'MS.rsplcore',   'unknown','formatted',0

and the listing of the files returns:

-rw-r--r-- 1 paboulet pmc6881 2.4K 2014-02-05 18:43 MS.struct
-rw-r--r-- 1 paboulet pmc6881  825 2014-02-05 18:45 MS.inc
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:13 MS.vsp
-rw--- 1 paboulet pmc6881 977K 2014-02-05 23:13 MS.vns
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.vrespcor
-rw--- 1 paboulet pmc6881 1.1K 2014-02-05 23:14 MS.scfc
-rw--- 1 paboulet pmc6881  73K 2014-02-05 23:14 MS.rsplcore
-rw--- 1 paboulet pmc6881 8.6K 2014-02-05 23:14 MS.outputc
-rw--- 1 paboulet pmc6881  160 2014-02-05 23:14 MS.corewf
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.clmcor


 
 From: Lyudmila Dobysheva lyuk...@mail.ru
 Sent: Thu Feb 06 07:19:02 CET 2014
 To: A Mailing list for WIEN2k users wien@zeus.theochem.tuwien.ac.at
 Subject: Re: [Wien] mBJ calculation stops after 2 cycles
 
 
 On 06.02.2014 03:25, pascal boulet wrote:
  After 2 cycles the job
  stops when starting the lcore program. The dayfile file reads:
  error: command   wien2k_13/lcore lcore.def failed
  The lcore.error file is empty.
 
 Is there an lcore.def file? What it contains?
 Make again:
   run_lapw -p -ec 0.0001 -cc 0.01 -i 200 -NI
 Does the error repeat in the first or other cycle? If no - that was some 
 aсcidental failure, for example, problem with disk, or the like.
 
 If repeats, make in terminal:
 x lcore
 and see the results.
 
 Best wishes
Lyudmila Dobysheva
 --
 Phys.-Techn. Institute of Ural Br. of Russian Ac. of Sci.
 426001 Izhevsk, ul.Kirova 132
 RUSSIA
 --
 Tel.:7(3412) 218988(office), 722529(Fax)
 E-mail: l...@ftiudm.ru, lyuk...@mail.ru (office)
  lyuk...@gmail.com (home)
 Skype:  lyuka17 (home), lyuka18 (office)
 http://fti.udm.ru/content/view/25/103/lang,english/
 --
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-
Pascal Boulet
Aix-Marseille University 
MADIREL Laboratory
Avenue Normandie-Niemen
13397 Marseille Cedex 20
Email: pascal.bou...@univ-amu.fr
Tel. +33 413 55 18 10
Fax  +33 413 55 18 50
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Re: [Wien] request

2014-02-06 Thread Saleem Ayaz
Dear Sir 
I calculated the density of state in parallel mode by giving the command x 
lapw2c -p -qtl -up
and it give this error. Why the calculation show problem in 
Nd3Si1.25Se7.energyup thoup I used -p

forrtl: severe (24): end-of-file during read, unit 30, file 
/auto/scratch/khan/job_3984107.arien.ics.muni.cz/Nd3Si1.25Se7/Nd3Si1.25Se7.energyup
Image              PC                Routine            Line        Source
lapw2c             0061249A  Unknown               Unknown  Unknown
lapw2c             00610F96  Unknown               Unknown  Unknown
lapw2c             005BAF80  Unknown               Unknown  Unknown
lapw2c             005753FF  Unknown               Unknown  Unknown
lapw2c             00574907  Unknown               Unknown  Unknown
lapw2c             00594996  Unknown               Unknown  Unknown
lapw2c             00432A5E  fermi_                     43  fermi_tmp_.F
lapw2c             00473A83  MAIN__                    296  lapw2_tmp_.F
lapw2c             0040418C  Unknown               Unknown  Unknown
libc.so.6          2B2A06156C8D  Unknown               Unknown  Unknown
lapw2c             00404089  Unknown               Unknown  Unknown
~




On Thursday, February 6, 2014 9:48 AM, t...@theochem.tuwien.ac.at 
t...@theochem.tuwien.ac.at wrote:
 
Hi,

For a parallel calculation (-p), the orbitals energies are printed
in case.energyup_1, case.energyup_2, etc. (the same for dn).



On Thu, 6 Feb 2014, Saleem Ayaz wrote:

 Dear users 
  I run the scf for spin polarize calculation of Nd3Si1.25Se7 using GGA+U. 
 I used the command runsp_lapw -p -ec 0.1 -orb and converged the energy. 
 The calculations
 are completed but Nd3Si1.25Se7.energyup and  Nd3Si1.25Se7.energydn are empty. 
 Please help me what is the problem.
 

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Re: [Wien] mBJ calculation stops after 2 cycles

2014-02-06 Thread tran

Hi,

are you sure that the executable wien2k_13/lcore is present?

F

On Thu, 6 Feb 2014, Pascal BOULET wrote:



I forgot to mention that I tried twice the calculation and I got the same 
result. So, it does not seem to be an accidental failure.

Second, I checked the lcore.def file: all the files mentioned in there exist 
and are not empty. It contains the following:

5,'MS.inc', 'old','formatted',0
6,'MS.outputc','unknown','formatted',0
8,'MS.vsp','old','formatted',0
9,'MS.clmcor', 'unknown','formatted',0
19,'MS.vns','unknown','formatted',0
20,'MS.struct',  'old','formatted',0 
21,'MS.scfc',   'unknown','formatted',0

28,'MS.vrespcor',   'unknown','formatted',0
29,'MS.corewf',   'unknown','formatted',0
83,'MS.rsplcore',   'unknown','formatted',0

and the listing of the files returns:

-rw-r--r-- 1 paboulet pmc6881 2.4K 2014-02-05 18:43 MS.struct
-rw-r--r-- 1 paboulet pmc6881  825 2014-02-05 18:45 MS.inc
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:13 MS.vsp
-rw--- 1 paboulet pmc6881 977K 2014-02-05 23:13 MS.vns
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.vrespcor
-rw--- 1 paboulet pmc6881 1.1K 2014-02-05 23:14 MS.scfc
-rw--- 1 paboulet pmc6881  73K 2014-02-05 23:14 MS.rsplcore
-rw--- 1 paboulet pmc6881 8.6K 2014-02-05 23:14 MS.outputc
-rw--- 1 paboulet pmc6881  160 2014-02-05 23:14 MS.corewf
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.clmcor




From: Lyudmila Dobysheva lyuk...@mail.ru
Sent: Thu Feb 06 07:19:02 CET 2014
To: A Mailing list for WIEN2k users wien@zeus.theochem.tuwien.ac.at
Subject: Re: [Wien] mBJ calculation stops after 2 cycles


On 06.02.2014 03:25, pascal boulet wrote:
 After 2 cycles the job
 stops when starting the lcore program. The dayfile file reads:
 error: command   wien2k_13/lcore lcore.def failed
 The lcore.error file is empty.

Is there an lcore.def file? What it contains?
Make again:
  run_lapw -p -ec 0.0001 -cc 0.01 -i 200 -NI
Does the error repeat in the first or other cycle? If no - that was some 
aсcidental failure, for example, problem with disk, or the like.


If repeats, make in terminal:
x lcore
and see the results.

Best wishes
   Lyudmila Dobysheva
--
Phys.-Techn. Institute of Ural Br. of Russian Ac. of Sci.
426001 Izhevsk, ul.Kirova 132
RUSSIA
--
Tel.:7(3412) 218988(office), 722529(Fax)
E-mail: l...@ftiudm.ru, lyuk...@mail.ru (office)
 lyuk...@gmail.com (home)
Skype:  lyuka17 (home), lyuka18 (office)
http://fti.udm.ru/content/view/25/103/lang,english/
--
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-

Pascal Boulet
Aix-Marseille University 
MADIREL Laboratory

Avenue Normandie-Niemen
13397 Marseille Cedex 20
Email: pascal.bou...@univ-amu.fr
Tel. +33 413 55 18 10
Fax  +33 413 55 18 50
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Re: [Wien] mBJ calculation stops after 2 cycles

2014-02-06 Thread Pascal BOULET

Hi,

Yes, I have just checked this out.

Pascal


 
 From: t...@theochem.tuwien.ac.at
 Sent: Thu Feb 06 10:48:13 CET 2014
 To: A Mailing list for WIEN2k users wien@zeus.theochem.tuwien.ac.at
 Subject: Re: [Wien] mBJ calculation stops after 2 cycles
 
 
 Hi,
 
 are you sure that the executable wien2k_13/lcore is present?
 
 F
 
 On Thu, 6 Feb 2014, Pascal BOULET wrote:
 
 
  I forgot to mention that I tried twice the calculation and I got the same 
  result. So, it does not seem to be an accidental failure.
 
  Second, I checked the lcore.def file: all the files mentioned in there 
  exist and are not empty. It contains the following:
 
  5,'MS.inc', 'old','formatted',0
  6,'MS.outputc','unknown','formatted',0
  8,'MS.vsp','old','formatted',0
  9,'MS.clmcor', 'unknown','formatted',0
  19,'MS.vns','unknown','formatted',0
  20,'MS.struct',  'old','formatted',0 
  21,'MS.scfc',   'unknown','formatted',0
  28,'MS.vrespcor',   'unknown','formatted',0
  29,'MS.corewf',   'unknown','formatted',0
  83,'MS.rsplcore',   'unknown','formatted',0
 
  and the listing of the files returns:
 
  -rw-r--r-- 1 paboulet pmc6881 2.4K 2014-02-05 18:43 MS.struct
  -rw-r--r-- 1 paboulet pmc6881  825 2014-02-05 18:45 MS.inc
  -rw--- 1 paboulet pmc6881  62K 2014-02-05 23:13 MS.vsp
  -rw--- 1 paboulet pmc6881 977K 2014-02-05 23:13 MS.vns
  -rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.vrespcor
  -rw--- 1 paboulet pmc6881 1.1K 2014-02-05 23:14 MS.scfc
  -rw--- 1 paboulet pmc6881  73K 2014-02-05 23:14 MS.rsplcore
  -rw--- 1 paboulet pmc6881 8.6K 2014-02-05 23:14 MS.outputc
  -rw--- 1 paboulet pmc6881  160 2014-02-05 23:14 MS.corewf
  -rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.clmcor
 
 
  
  From: Lyudmila Dobysheva lyuk...@mail.ru
  Sent: Thu Feb 06 07:19:02 CET 2014
  To: A Mailing list for WIEN2k users wien@zeus.theochem.tuwien.ac.at
  Subject: Re: [Wien] mBJ calculation stops after 2 cycles
  
  
  On 06.02.2014 03:25, pascal boulet wrote:
   After 2 cycles the job
   stops when starting the lcore program. The dayfile file reads:
   error: command   wien2k_13/lcore lcore.def failed
   The lcore.error file is empty.
  
  Is there an lcore.def file? What it contains?
  Make again:
run_lapw -p -ec 0.0001 -cc 0.01 -i 200 -NI
  Does the error repeat in the first or other cycle? If no - that was some 
  aсcidental failure, for example, problem with disk, or the like.
  
  If repeats, make in terminal:
  x lcore
  and see the results.
  
  Best wishes
 Lyudmila Dobysheva
  --
  Phys.-Techn. Institute of Ural Br. of Russian Ac. of Sci.
  426001 Izhevsk, ul.Kirova 132
  RUSSIA
  --
  Tel.:7(3412) 218988(office), 722529(Fax)
  E-mail: l...@ftiudm.ru, lyuk...@mail.ru (office)
   lyuk...@gmail.com (home)
  Skype:  lyuka17 (home), lyuka18 (office)
  http://fti.udm.ru/content/view/25/103/lang,english/
  --
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  http://zeus.theochem.tuwien.ac.at/mailman/listinfo/wien
  SEARCH the MAILING-LIST at:  
  http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/index.html
 
 
 
  -
  Pascal Boulet
  Aix-Marseille University 
  MADIREL Laboratory
  Avenue Normandie-Niemen
  13397 Marseille Cedex 20
  Email: pascal.bou...@univ-amu.fr
  Tel. +33 413 55 18 10
  Fax  +33 413 55 18 50
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-
Pascal Boulet
Aix-Marseille University 
MADIREL Laboratory
Avenue Normandie-Niemen
13397 Marseille Cedex 20
Email: pascal.bou...@univ-amu.fr
Tel. +33 413 55 18 10
Fax  +33 413 55 18 50
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[Wien] Please help me

2014-02-06 Thread kalsoom Khan
Dear All
Please some one help me that can i do calculation using GW method in Wien2k. If 
yes then how please help me.
with best regards
Kalsoom___
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Re: [Wien] Not able to stop charge leakage. Tried Reduced RMT/seperation energy

2014-02-06 Thread kalsoom Khan
SELECT ENERGY to separate core and valence states: recommended: -6.0 Ry (check 
how much core charge leaks out of MT-sphere) ALTERNATIVELY: specify charge 
localization (between 0.97 and 1.0) to select core state 
Please try to give -7.0, if this again leak out then give -8.0 and go up to -9.8



On Monday, February 3, 2014 11:40 AM, Naseem Hassan rahesk...@gmail.com wrote:
 
Dear Users


I tried to stop the charge leakage although I changed the seperation energy up 
to -10Ry

and also reduced the RMT upto 5%. Both of the actions was not able to prevent 
charge density. Kindly have a look on the information below to understand the 
problem.


 SELECT XCPOT:
  recommended: 13: PBE-GGA (Perdew-Burke-Ernzerhof 96)
5: LSDA
   11: WC-GGA (Wu-Cohen 2006)
   19: PBEsol-GGA (Perdew etal. 2008)
  SELECT ENERGY to separate core and valence states:
  recommended: -6.0 Ry (check how much core charge leaks out of MT-sphere)
  ALTERNATIVELY: specify charge localization
  (between 0.97 and 1.0) to select core state

:WARNING: 0.965  Te   CORE electrons leak out of MT-sphere 
:WARNING: touch .lcore and run scf-cycle with core density superposition
:WARNING: Or: rerun lstart with lower E-core separation energy 
:WARNING: ORBITAL:  4P*-8.883-8.883
:WARNING: ORBITAL:  4P -8.169-8.169

:WARNING: 0.965  Te   CORE electrons leak out of MT-sphere 
:WARNING: touch .lcore and run scf-cycle with core density superposition
:WARNING: Or: rerun lstart with lower E-core separation energy 
:WARNING: ORBITAL:  4P*-8.883-8.883
:WARNING: ORBITAL:  4P -8.169-8.169
LSTART ENDS
0.167u 0.008s 0:00.17 94.1% 0+0k 0+960io 0pf+0w



Best Reagrds

Naseem 

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Re: [Wien] mBJ calculation stops after 2 cycles

2014-02-06 Thread Lyudmila Dobysheva

On 06.02.2014 13:36, Pascal BOULET wrote:

I forgot to mention that I tried twice the calculation and I got the same 
result. So, it does not seem to be an accidental failure.


1)
 If repeats, make in terminal:
 x lcore
 and see the results.
???


-rw-r--r-- 1 paboulet pmc6881 2.4K 2014-02-05 18:43 MS.struct
-rw-r--r-- 1 paboulet pmc6881  825 2014-02-05 18:45 MS.inc
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:13 MS.vsp
-rw--- 1 paboulet pmc6881 977K 2014-02-05 23:13 MS.vns
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.vrespcor
-rw--- 1 paboulet pmc6881 1.1K 2014-02-05 23:14 MS.scfc
-rw--- 1 paboulet pmc6881  73K 2014-02-05 23:14 MS.rsplcore
-rw--- 1 paboulet pmc6881 8.6K 2014-02-05 23:14 MS.outputc
-rw--- 1 paboulet pmc6881  160 2014-02-05 23:14 MS.corewf
-rw--- 1 paboulet pmc6881  62K 2014-02-05 23:14 MS.clmcor


We see that some output of lcore had been actually done.
2) Look in scfc and outputc files what they contain.
3) better send struct file, so that we could repeat the calculation.
4) now I cannot understand from where you have taken the line in the 
first letter:

ec cc and fc_conv 0 0 1
in cycle 2ETEST: 3.399591825000   CTEST: .5658994
Mixer should have done this, but lcore stopped in the cycle 2 ???
Send, then, the dayfile also.


On 06.02.2014 03:25, pascal boulet wrote:

After 2 cycles the job
stops when starting the lcore program. The dayfile file reads:
error: command   wien2k_13/lcore lcore.def failed
The lcore.error file is empty.


5) do look inside the lcore.error file, maybe it is not empty.

Best wishes
  Lyudmila Dobysheva
--
Phys.-Techn. Institute of Ural Br. of Russian Ac. of Sci.
426001 Izhevsk, ul.Kirova 132
RUSSIA
--
Tel.:7(3412) 218988(office), 722529(Fax)
E-mail: l...@ftiudm.ru, lyuk...@mail.ru (office)
lyuk...@gmail.com (home)
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Re: [Wien] Please help me

2014-02-06 Thread tran

There is no GW module officially included in WIEN2k, but a separate
GW code being developed by Mr. Hong Jiang:
http://www.chem.pku.edu.cn/jianghgroup/codes/fhi-gap.html

Be aware that GW calculations require important computational ressources.

F. Tran

On Thu, 6 Feb 2014, kalsoom Khan wrote:


Dear All
Please some one help me that can i do calculation using GW method in Wien2k.
If yes then how please help me.
with best regards
Kalsoom



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Re: [Wien] w2web interface not launching from web browser

2014-02-06 Thread Gavin Abo

[ahuja@localhost ~]$ w2web = Your terminal shows localhost not 
localhost.localdomain.
 Have you tried localhost for the w2web setup?

On 2/6/2014 2:58 AM, Ushma Ahuja wrote:

Dear Wien2k users,

I have installed Wien2k_13 in an intel core I7 machine with Red hat Linux 5.5
I did the site configuration with root login and then did the user 
configuration for the local user.
On installing w2web in the local user, the respective directory files are all 
generated successfully in Wien2k's folder but I am unable to access the w2web 
interface through the web browser
  (I am using Firefox). I keep getting the server not found message. Also, I 
get the following message on the terminal. On removing the w2web directory and on 
re-installing it, I am again getting the same message.

[ahuja@localhost ~]$ w2web
###
# w2web starter   #
# Copyright (C) 2001 luitz.at #
###
hostname: Host name lookup failure
w2web installer on host localhost.localdomain

###
# w2web installer #
# Copyright (C) 2001 luitz.at #
###

Checking for Installation in /home/blahuja/.w2web/localhost.localdomain

hostname: Host name lookup failure
w2web failed to bind port 7890 - port already in use!
You may want to try w2web -p portnumber


I also tried to create a ssh tunnel and got the following message:

[ahuja@localhost Wien2k_13]$ ssh -fNL 2000:localhost.localdomain:1244 
user@localhost.localdomain
ssh: localhost.localdomain: Temporary failure in name resolution
[ahuja@localhost Wien2k_13]$ ssh -fNL 2000:localhost.localdomain:1244 
ahuja@localhost.localdomain
ssh: localhost.localdomain: Temporary failure in name resolution

I have tried executing some scf cycles for sample TiC from the terminal just to 
check on the proper installation of Wien and they seem to be doing fine. It is 
only the w2web interface I can't access right now.
Any help would be great!

regards,

Ms. Ushma Ahuja
Faculty of Engineering
Mohan Lal Sukhadia University
Udaipur, India


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[Wien] showing rhombohedral to hexagonal symmetry

2014-02-06 Thread negin kamali
Dear Prof. StefaanCottenier,
Thanks for your nice guide
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[Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread Naseem Hassan
Dear Users,

This is strange but what else I can do except reporting it. I am unable to
download the attachment from the fallowing email which is in the archive
(probably never attached).

http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08497.html

Kindly suggest me how can I make Bi2Se3 structure file ? The space group is

space group R3m (166)and structure is hexagonal.
*But I do not know how many atoms should *


*I generate for structure file and what are the positions for respective *


*atoms ? I would appreciate if some one help how to find position*



*from the official link below, in this way I will learn alot.
http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal
http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal
*

Best wishes

Naseem (A beginner in wien2k code)
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Re: [Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread McDermott Eamon John Gordon
Crystallography.nethttp://Crystallography.net appears to have the structure 
you want: http://www.crystallography.net/9011965.html

Simply download the .CIF file and use 'cif2struct'.

Regards,

--
Eamon McDermott, M.Sc.
Institute of Materials Chemistry, TU Wien
eamon.mcderm...@tuwien.ac.atmailto:eamon.mcderm...@tuwien.ac.at
Office: +43 (1) 58801-165304
Scheduling: http://doodle.com/eamon.mcdermott

On Feb 6, 2014, at 3:35 PM, Naseem Hassan 
rahesk...@gmail.commailto:rahesk...@gmail.com wrote:

Dear Users,

This is strange but what else I can do except reporting it. I am unable to 
download the attachment from the fallowing email which is in the archive 
(probably never attached).

http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08497.html

Kindly suggest me how can I make Bi2Se3 structure file ? The space group is

space group R3m (166)and structure is hexagonal. But I do not know how many 
atoms should

I generate for structure file and what are the positions for respective

atoms ? I would appreciate if some one help how to find position



from the official link below, in this way I will learn alot.

http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal



Best wishes

Naseem (A beginner in wien2k code)

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Re: [Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread Naseem Hassan
Dear Sir,

Thank you so much for your input. Sir, if possible kindly teach me how to
extract position from the fallowing wycoff position. Please help because it
will be a general skill that will add to my knowledge.

http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal


Thank You Sir,
Naseem (A beginner)



On Thu, Feb 6, 2014 at 7:55 PM, McDermott Eamon John Gordon 
eamon.mcderm...@tuwien.ac.at wrote:

  Crystallography.net appears to have the structure you want:
 http://www.crystallography.net/9011965.html

  Simply download the .CIF file and use 'cif2struct'.

  Regards,

  --
 Eamon McDermott, M.Sc.
 Institute of Materials Chemistry, TU Wien
 eamon.mcderm...@tuwien.ac.at
 Office: +43 (1) 58801-165304
 Scheduling: http://doodle.com/eamon.mcdermott

  On Feb 6, 2014, at 3:35 PM, Naseem Hassan rahesk...@gmail.com wrote:

   Dear Users,

  This is strange but what else I can do except reporting it. I am unable
 to download the attachment from the fallowing email which is in the archive
 (probably never attached).

 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08497.html

  Kindly suggest me how can I make Bi2Se3 structure file ? The space group
 is

 space group R3m (166)and structure is hexagonal.
 *But I do not know how many atoms should *


 *I generate for structure file and what are the positions for respective *


 *atoms ? I would appreciate if some one help how to find position
 *



 *from the official link below, in this way I will learn alot. 
 http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal
  
 http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal
  *

 Best wishes

 Naseem (A beginner in wien2k code)

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[Wien] dstart error- wien2k 2013

2014-02-06 Thread ben amara imen
Hello,

Im working on ternary compound with spinel symmetry using *wien2k 2009* and
every thing is gone well. But when I tried to repeat the same calculation
with *wien2k 2013*, there is an error just after xdstart ! the error is
ROTDEF : no sym operation found ( it is for two atoms) , knowing that no
problem for  x sgroup and x symmetry !
I want to know if this error has a relation with the wien2k's version,.
Then, What can I do to overcome this error??
 Can someone  help me please
best regards
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Re: [Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread Laurence Marks
I suggest that you do a Google Search e.g.

https://www.google.com/search?q=wycoff+positionsoq=wycoff+positionsaqs=chrome..69i57.4946j0sourceid=chromeie=UTF-8#q=wyckoff+positionsspell=1

On Thu, Feb 6, 2014 at 9:30 AM, Naseem Hassan rahesk...@gmail.com wrote:
 Dear Sir,

 Thank you so much for your input. Sir, if possible kindly teach me how to
 extract position from the fallowing wycoff position. Please help because it
 will be a general skill that will add to my knowledge.

 http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal


 Thank You Sir,
 Naseem (A beginner)



 On Thu, Feb 6, 2014 at 7:55 PM, McDermott Eamon John Gordon
 eamon.mcderm...@tuwien.ac.at wrote:

 Crystallography.net appears to have the structure you want:
 http://www.crystallography.net/9011965.html

 Simply download the .CIF file and use 'cif2struct'.

 Regards,

 --
 Eamon McDermott, M.Sc.
 Institute of Materials Chemistry, TU Wien
 eamon.mcderm...@tuwien.ac.at
 Office: +43 (1) 58801-165304
 Scheduling: http://doodle.com/eamon.mcdermott

 On Feb 6, 2014, at 3:35 PM, Naseem Hassan rahesk...@gmail.com wrote:

 Dear Users,

 This is strange but what else I can do except reporting it. I am unable to
 download the attachment from the fallowing email which is in the archive
 (probably never attached).

 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08497.html

 Kindly suggest me how can I make Bi2Se3 structure file ? The space group
 is

 space group R3m (166)and structure is hexagonal. But I do not know how
 many atoms should

 I generate for structure file and what are the positions for respective

 atoms ? I would appreciate if some one help how to find position

 from the official link below, in this way I will learn alot.


 http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal



 Best wishes

 Naseem (A beginner in wien2k code)

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-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu 1-847-491-3996
Research is to see what everybody else has seen, and to think what
nobody else has thought
Albert Szent-Gyorgi
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Re: [Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread Naseem Hassan
Dear Professor Marks,

Surely you are advising me right. The similar question was asked by another
student but was not entertained on the mailing list. For example to
generate ZnAl2O4 structure. We just select 3 atoms in Strucgen and give
positions Zn (0.125,0.125,0.125), Al (0.5,0.5,0.5) and O(0.25,0.25,0.25)
along with selecting space group #227. It generates 14 atoms primitive cell
aumatically. If we see the wycoff positions for the space group# 227 (
http://www.cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=227gor=1)
I would never have idea how many atoms should I select and how to give
positions of these values. I will definitely read wycoff positions in depth
But kindly through some light on my confusion.

Thank You Sir Marks and McDermott.



On Thu, Feb 6, 2014 at 8:59 PM, Laurence Marks l-ma...@northwestern.eduwrote:

 I suggest that you do a Google Search e.g.


 https://www.google.com/search?q=wycoff+positionsoq=wycoff+positionsaqs=chrome..69i57.4946j0sourceid=chromeie=UTF-8#q=wyckoff+positionsspell=1

 On Thu, Feb 6, 2014 at 9:30 AM, Naseem Hassan rahesk...@gmail.com wrote:
  Dear Sir,
 
  Thank you so much for your input. Sir, if possible kindly teach me how to
  extract position from the fallowing wycoff position. Please help because
 it
  will be a general skill that will add to my knowledge.
 
 
 http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal
 
 
  Thank You Sir,
  Naseem (A beginner)
 
 
 
  On Thu, Feb 6, 2014 at 7:55 PM, McDermott Eamon John Gordon
  eamon.mcderm...@tuwien.ac.at wrote:
 
  Crystallography.net appears to have the structure you want:
  http://www.crystallography.net/9011965.html
 
  Simply download the .CIF file and use 'cif2struct'.
 
  Regards,
 
  --
  Eamon McDermott, M.Sc.
  Institute of Materials Chemistry, TU Wien
  eamon.mcderm...@tuwien.ac.at
  Office: +43 (1) 58801-165304
  Scheduling: http://doodle.com/eamon.mcdermott
 
  On Feb 6, 2014, at 3:35 PM, Naseem Hassan rahesk...@gmail.com wrote:
 
  Dear Users,
 
  This is strange but what else I can do except reporting it. I am unable
 to
  download the attachment from the fallowing email which is in the archive
  (probably never attached).
 
 
 http://www.mail-archive.com/wien@zeus.theochem.tuwien.ac.at/msg08497.html
 
  Kindly suggest me how can I make Bi2Se3 structure file ? The space group
  is
 
  space group R3m (166)and structure is hexagonal. But I do not know how
  many atoms should
 
  I generate for structure file and what are the positions for respective
 
  atoms ? I would appreciate if some one help how to find position
 
  from the official link below, in this way I will learn alot.
 
 
 
 http://cryst.ehu.es/cgi-bin/cryst/programs/nph-wp-list?gnum=166grha=hexagonal
 
 
 
  Best wishes
 
  Naseem (A beginner in wien2k code)
 
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 --
 Professor Laurence Marks
 Department of Materials Science and Engineering
 Northwestern University
 www.numis.northwestern.edu 1-847-491-3996
 Research is to see what everybody else has seen, and to think what
 nobody else has thought
 Albert Szent-Gyorgi
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Re: [Wien] request

2014-02-06 Thread Peter Blaha
Most likely the problem is that you don't have a valid .processes file 
in your directory.

Without that, wien2k neglects the -p switch ...

Am 06.02.2014 10:36, schrieb Saleem Ayaz:

Dear Sir
I calculated the density of state in parallel mode by giving the command
x lapw2c -p -qtl -up
and it give this error. Why the calculation show problem in
Nd3Si1.25Se7.energyup thoup I used -p

forrtl: severe (24): end-of-file during read, unit 30, file
/auto/scratch/khan/job_3984107.arien.ics.muni.cz/Nd3Si1.25Se7/Nd3Si1.25Se7.energyup
Image  PCRoutineLineSource
lapw2c 0061249A  Unknown   Unknown  Unknown
lapw2c 00610F96  Unknown   Unknown  Unknown
lapw2c 005BAF80  Unknown Unknown  Unknown
lapw2c 005753FF  Unknown   Unknown  Unknown
lapw2c 00574907  Unknown   Unknown  Unknown
lapw2c 00594996  Unknown   Unknown  Unknown
lapw2c 00432A5E  fermi_ 43
  fermi_tmp_.F
lapw2c 00473A83  MAIN__296  lapw2_tmp_.F
lapw2c 0040418C  Unknown   Unknown  Unknown
libc.so.6  2B2A06156C8D  Unknown   Unknown  Unknown
lapw2c 00404089  Unknown   Unknown  Unknown
~



On Thursday, February 6, 2014 9:48 AM, t...@theochem.tuwien.ac.at
t...@theochem.tuwien.ac.at wrote:
Hi,

For a parallel calculation (-p), the orbitals energies are printed
in case.energyup_1, case.energyup_2, etc. (the same for dn).


On Thu, 6 Feb 2014, Saleem Ayaz wrote:

  Dear users
   I run the scf for spin polarize calculation of Nd3Si1.25Se7 using
GGA+U.
  I used the command runsp_lapw -p -ec 0.1 -orb and converged the
energy. The calculations
  are completed but Nd3Si1.25Se7.energyup and  Nd3Si1.25Se7.energydn
are empty.
  Please help me what is the problem.
 
 

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--
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Inst.Materials Chemistry
TU Vienna
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A-1060 Vienna
Austria
+43-1-5880115671
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[Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread Martin Kroeker
There is an entire branch of science called Crystallography. Please do
not expect us to give the equivalent of a crystallography 101 lecture in 
a newsgroup.
In (too) short, atomic positions as well as spacegroup assigments are 
determined 
experimentally, typically by X-ray diffraction. 
And while it is always possible to state which of these atomic positions 
corresponds to which Wyckoff site in the group-theoretical treatment of the 
unit cell symmetry, the reverse is usually not true. (Not all the
Wyckoff positions need to be occupied, also most have free numeric parameters
x, y, and/or z that are not determined by symmetry considerations anyway).
Wyckoff position tells you something about symmetry effects at that
point, and in cases such as your ZnAl2O4 can be used as a shorthand
notation for the coordinates - Zn on 16c, Al on 8b and O on 32e with
x=0.25. (Actually the 0.25 is a bit misleading - this is not an exact
symmetry-imposed number like the 1/8 and 1/2 of the other two sites - it 
might just as well be 0.2473 or something, just that it is the same in
x,y,z)
Normally in inorganic chemistry one would learn a few typical crystal 
structures - structure types - that certain key compound classes crystallize
in (spinel or inverse spinel in your case), and would then be able 
to generate at least an approximate structure from the knowledge that 
something crystallizes in such-and-such structure type.
For exact coordinates, consult databases and/or original publications. 
-- 
Dr. Martin Kroekermar...@ruby.chemie.uni-freiburg.de
c/o Prof.Dr. Caroline Roehr
Institut fuer Anorganische und Analytische Chemie der Universitaet Freiburg

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Re: [Wien] showing rhombohedral in hexagonal symmetry

2014-02-06 Thread swati chaudhury
use Cryscon software.

best wishes



 From: GHOSH Suddhasattwa ssgh...@igcar.gov.in
To: 'A Mailing list for WIEN2k users' wien@zeus.theochem.tuwien.ac.at 
Sent: Thursday, 6 February 2014 11:59 AM
Subject: Re: [Wien] showing rhombohedral in hexagonal symmetry
 


 
Please use Bilbao
crystallographic server suite of programs for transforming your structure to
hexagonal setting. 
 
From:wien-boun...@zeus.theochem.tuwien.ac.at
[mailto:wien-boun...@zeus.theochem.tuwien.ac.at] On Behalf Of negin
kamali
Sent: Thursday, February 06, 2014 11:50 AM
To: wien@zeus.theochem.tuwien.ac.at
Subject: [Wien] showing rhombohedral in hexagonal symmetry
 
Dear Wien2K Users,
I want to run the sm-element in hexagonal
symmetry. Sm-element is a rhombohedral structure with
166(R-3m space group) and a=8.966A and alpha=23.13 and the atomic position are
(0 0 0) (2/9 2/9 2/9) (7/9 7/9 7/9).
I know, In WIEN2K, when we want to run rhombohedral structure, we must to 
change the lattice constant to hexagonal which is in sm case a=b=3.621 and 
c=26.25 A (aphlfa=beta=90 and
gamma=120), but i could not determine the positions in hexagonal axes.As you 
know
in crystallography the R-3m space group has two sub-state first r-axes an
second h-axes.
So, i want to know;
First: how the number of atoms are changed in this conversion
(from rhombohedral to hexagonal symmetry)?  (it
means, is it necessary to change number of atom when i want to convert a 
rhombohedral symmetry to hexagonal) Second: What are the
atomic positions in h-axes?
 
 
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Re: [Wien] Bi2Se3 atomic positions in wien2k structure file.

2014-02-06 Thread Naseem Hassan
Thank you Sir, Kroeker. for your illustration. I really appreciate you kind
response.

Thank you once again.
Best Wishes
Naseem


On Fri, Feb 7, 2014 at 1:48 AM, Martin Kroeker 
mar...@ruby.chemie.uni-freiburg.de wrote:

 There is an entire branch of science called Crystallography. Please do
 not expect us to give the equivalent of a crystallography 101 lecture in
 a newsgroup.
 In (too) short, atomic positions as well as spacegroup assigments are
 determined
 experimentally, typically by X-ray diffraction.
 And while it is always possible to state which of these atomic positions
 corresponds to which Wyckoff site in the group-theoretical treatment of the
 unit cell symmetry, the reverse is usually not true. (Not all the
 Wyckoff positions need to be occupied, also most have free numeric
 parameters
 x, y, and/or z that are not determined by symmetry considerations anyway).
 Wyckoff position tells you something about symmetry effects at that
 point, and in cases such as your ZnAl2O4 can be used as a shorthand
 notation for the coordinates - Zn on 16c, Al on 8b and O on 32e with
 x=0.25. (Actually the 0.25 is a bit misleading - this is not an exact
 symmetry-imposed number like the 1/8 and 1/2 of the other two sites - it
 might just as well be 0.2473 or something, just that it is the same in
 x,y,z)
 Normally in inorganic chemistry one would learn a few typical crystal
 structures - structure types - that certain key compound classes
 crystallize
 in (spinel or inverse spinel in your case), and would then be able
 to generate at least an approximate structure from the knowledge that
 something crystallizes in such-and-such structure type.
 For exact coordinates, consult databases and/or original publications.
 --
 Dr. Martin Kroekermar...@ruby.chemie.uni-freiburg.de
 c/o Prof.Dr. Caroline Roehr
 Institut fuer Anorganische und Analytische Chemie der Universitaet Freiburg

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