Re: [Wien] What are the atomic positions of the antiferromagnetic structure of the NiS compund

2016-03-12 Thread ABDERRAHMANE REGGAD
Thank you Mr Abo for your reply.

I have tried your precedure and I got the same results.

Best regards
-- 
Mr: A.Reggad
Laboratoire de Génie Physique
Université Ibn Khaldoun - Tiaret
Algerie
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Re: [Wien] What are the atomic positions of the antiferromagnetic structure of the NiS compund

2016-03-06 Thread Gavin Abo
The short answer: contact the corresponding author(s) of the literature 
and ask them if they can provide that data.


The long answer:

You could try the following to see if you can get what you want.

1. Start with the NiAs structure [ 
https://chemistry.osu.edu/~woodward/ch754/struct/NiAs.htm ]:


username@computername:~/wiendata/NiS$ ls
NiS.struct
username@computername:~/wiendata/NiS$ sed -n '2p' NiS.struct
H   LATTICE,NONEQUIV.ATOMS:  2 194_P63/mmc <= Shows that NiS structure 
file with NiAs parameters has space group 194.


2. Split the Ni equivalent positions into non-equivalent ones.

Use the structeditor (refer to section "9.26 structeditor" in the WIEN2k 
usersguide) to split all the positions:


username@computername:~/wiendata/NiS$ octave
GNU Octave, version 3.8.1
...

octave:1> s=loadstruct('NiS.struct');
octave:2> p=makeprimitive(s);
octave:3> savestruct(p,'NiS.struct_prim');
octave:4> exit

Use a text editor (like gedit) to label the positions that you want to 
be non-equivalent
(similar to constructing  a supercell [ 
http://www.wien2k.at/reg_user/faq/supercells.html ]):


username@computername:~/wiendata/NiS$ sed -n '7p' NiS.struct_prim
Ni NPT=  781  R0=.5 RMT= 2.31000   Z:  28.0 <= 
Without special label

username@computername:~/wiendata/NiS$ sed -n '13p' NiS.struct_prim
Ni NPT=  781  R0=.5 RMT= 2.31000   Z:  28.0
username@computername:~/wiendata/NiS$ gedit NiS.struct_prim
username@computername:~/wiendata/NiS$ sed -n '7p' NiS.struct_prim
Ni1NPT=  781  R0=.5 RMT= 2.31000   Z:  28.0 <= With 
special label. WARNING: make sure you maintain the formatting (e.g., 
file spacing), else use StructGen.

username@computername:~/wiendata/NiS$ sed -n '13p' NiS.struct_prim
Ni2NPT=  781  R0=.5 RMT= 2.31000   Z:  28.0 <= Shows 
that one blank space was removed and 2 was added after Ni.

username@computername:~/wiendata/NiS$ mv NiS.struct NiS.struct_orig
username@computername:~/wiendata/NiS$ cp NiS.struct_prim NiS.struct

or an alternative method is to:

open NiS.struct in StructGen of w2web
select 'H' for the Lattice
click 'Save Structure'
click 'continue editing'
click 'split' next to Pos2 for the Ni atom (Atom 1)
enter 1 in the special label box (second box) for Atom 1 (Ni atom with 
position 0, 0, 0)
enter 2 in the special label box after Atom 2 (Ni atom with the position 
0, 0, 0.5)


3. Use the sgroup program to find and generate a structure file with the 
new space group:


username@computername:~/wiendata/NiS$ x sgroup
0.0u 0.0s 0:00.00 0.0% 0+0k 0+8io 0pf+0w
username@computername:~/wiendata/NiS$ cp NiS.struct_sgroup NiSafm.struct
username@computername:~/wiendata/NiS$ sed -n '2p' NiSafm.struct
H   LATTICE,NONEQUIV.ATOMS:  3 164 P-3m1<= sgroup found and generated a 
structure file with space group 164, which seems to be what you are 
looking for.


You would still need to take NiSafm.struct, adjust it for your lattice 
constants (as you did not provide them), run init_lapw to make sure it 
passes all the checks, and look at it in XCrySDen to verify that it is 
still the same structure that is being used in the literature.


On 3/6/2016 1:36 PM, ABDERRAHMANE REGGAD wrote:


Dear wien2k's users

I'm going to do the antiferromagnetic calculation of the NiS compound 
which has the NiAs structure in the non magnetic state (space group: 
195 ;atomic positions : Ni 2a 0, 0, 0 S 2c 1/3, 2/3, 1/4)


The antiferromagnetic structure , as i found in the literature, has 
the space group number of 164 which a subgroup of the first one .


I need to know how to get the atomic poistions of the 
antoferromagnetic strucure.


Best wishes
--
Mr: A.Reggad
Laboratoire de Génie Physique
Université Ibn Khaldoun - Tiaret
Algerie
NiS
H   LATTICE,NONEQUIV.ATOMS:  2 194_P63/mmc 
MODE OF CALC=RELA unit=ang 
  6.821914  6.821914  9.501547 90.00 90.00120.00   
ATOM  -1: X=0. Y=0. Z=0.
  MULT= 2  ISPLIT= 4
  -1: X=0. Y=0. Z=0.5000
Ni NPT=  781  R0=0.5000 RMT=2.3100   Z: 28.0   
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
ATOM  -2: X=0. Y=0.6667 Z=0.2500
  MULT= 2  ISPLIT= 4
  -2: X=0.6667 Y=0. Z=0.7500
S  NPT=  781  R0=0.0001 RMT=2.0200   Z: 16.0   
LOCAL ROT MATRIX:1.000 0.000 0.000
 0.000 1.000 0.000
 0.000 0.000 1.000
  24  NUMBER OF SYMMETRY OPERATIONS
-1 0 0 0.
-1 1 0 0.
 0 0-1 0.
   1
-1 1 0 0.
-1 0 0 0.
 0 0 1 0.
   2

[Wien] What are the atomic positions of the antiferromagnetic structure of the NiS compund

2016-03-06 Thread ABDERRAHMANE REGGAD
Dear wien2k's users

I'm going to do the antiferromagnetic calculation of the NiS compound which
has the NiAs structure in the non magnetic state (space group: 195 ;atomic
positions : Ni2a 0, 0, 0 S   2c 1/3, 2/3, 1/4)

The antiferromagnetic structure , as i found in the literature, has the
space group number of 164 which a subgroup of the first one .

I need to know how to get the atomic poistions of the antoferromagnetic
strucure.

Best wishes
-- 
Mr: A.Reggad
Laboratoire de Génie Physique
Université Ibn Khaldoun - Tiaret
Algerie
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