Re: [Wien] Photon energies in XES ...

2015-10-02 Thread Vladimir Timoshevskii
Dear Peter,

I apologize for late reply - I was travelling with a very limited access to
email ...

Thank you very much for your clarification. Yes, I understand now, I was
really mixing 2 different concepts - the spectrum quality (profile) and the
energy of the core levels. If I understand you correctly, the XES spectrum
itself we calculate using the final state rule (without core hole), but
energy shift we calculate using Slater transition state. And the latter
"trick" has nothing to do with the spectrum itself - it just fixes the
incorrect core level energies ...

Just a small question: Can you (or other users/developers interested in
this topic) point me to a reference where the physical ground of the "final
state rule" is provided? I did multiple searches in the literature, but
found no derivation of this rule - it is more stated as an "observation"...


Thanks a lot again for your time and comments!

Sincerely,
Vlad.

2015-08-28 13:38 GMT-04:00 Peter Blaha :

> You are mixing 2 concepts:
>
> a) Yes, the final state rule applies and thus for XES calculations you
> should NOT use a core hole, but use the ground state DOS.
>
> b) Strictly speaking, only E-tot is a valid quantity in DFT. In
> particular, the eigenvalues are in principle NOT excitation energies.
> However, for delocalized states (eg. valence electrons) experience has
> shown that the eigenvalues (bandstructure,DOS) can be used to interprete
> experimental spectra.
> This is, however, no true for localized states (core states), because
> these eigenvalues are not ionization energies but are defined as the
> derivative of the total energy with respect to occupation of the
> corresponding state.
>  e_i =d E / d n_i
> So one can use "Slaters transition state" approximation and make a
> supercell calculation, where on one atom HALF an electron should be
> removed. After scf, check the eigenvalue (with respect to EF) and you
> should obtain a significantly better binding energy of this core state (and
> the corresponding absolute XES transition energy.
> (Typically the error of a 1s core state is reduced from eg. 10 eV to about
> 1 eV.
> (about XPS energies and Slaters transition state see my lecture notes of
> our workshops on our web site).
>
>
> Am 28.08.2015 um 17:19 schrieb Vladimir Timoshevskii:
>
>> Dear Wien2k users and developers,
>>
>> I am working with experimentalists and try to simulate the XES measured
>> by soft x-ray detector, coupled with electron microscope. So, the
>> ionization source in this setup is the electronic gun of the TEM. The
>> test compound is hexagonal layered BN, which was quite well studied
>> before, including the similar setup. I would greatly appreciate if you
>> could share your opinion on the following 2 issues, which I am facing now:
>>
>> i) Is it possible, in principle, to obtain correct photon energies
>> instead of shifting spectrum by hand to the EF position? I understand,
>> that the position of the core level (B-1s) is sensitive to the form of
>> the potential well, and the closer my potential is to the real one, the
>> better is the position of the core level. I tried different
>> XC-functionals, and found that actually the atomic-like Hartree-Fock
>> gives the best results: the whole spectrum (B K-edge) is shifted to
>> higher energies, closer to experiment, and the spectrum shape is also
>> much better. However, there is still ~10eV shift, relative to the
>> experimental spectrum. So, the XC-functional alone does not solve this
>> problem ...
>>
>> ii) This is a more fundamental question, and is actually related to the
>> first one. I guess, the main reason for the photon energy
>> underestimation is the presence of the core hole, which shifts the
>> ionized core level to lower energies. I did several test calculations of
>> B-K spectrum using supercells of diffferent sizes with a core hole in B
>> 1s. Indeed, by playing with fractional B 1s occupation (trying to catch
>> the "transition state"), it seems to be possible to shift the whole
>> spectrum to experimental position. But in this case, what about the
>> "rule of the final state"? According to this rule, the hole must be
>> created in the valence band (and screened out), and the core lavel must
>> be filled. This is what we normally assume ... Does that mean that the
>> XES calculations with hole in the core are unphysical, in spite of
>> giving better photon energies? May be, the situation here, especially
>> when we use TEM electronic gun for core ionization,  is more
>> complicated? In my opinion, the valence-core transitions are happening
>> in the potential, already distorted by the presence of the core hole. Am
>> I right? Then, how it agrees with the "rule of the final state"? Any
>> thoughts on that would be highly appreciated!
>>
>> Thanks a lot in advance!
>>
>> Vladimir Timoshevskii
>>
>>
>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.tu

Re: [Wien] Photon energies in XES ...

2015-09-28 Thread Vladimir Timoshevskii
Dear Peter,

I apologize for late reply - I was travelling with a very limited access to
email ...

Thank you very much for your clarification. Yes, I understand now, I was
really mixing 2 different concepts - the spectrum quality (profile) and the
energy of the core levels. If I understand you correctly, the XES spectrum
itself we calculate using the final state rule (without core hole), but
energy shift we calculate using Slater transition state. And the latter
"trick" has nothing to do with the spectrum itself - it just fixes the
incorrect core level energies ...

Just a small question: Can you (or other users/developers interested in
this topic) point me to a reference where the physical ground of the "final
state rule" is provided? I did multiple searches in the literature, but
found no derivation of this rule - it is more stated as an "observation"...


Thanks a lot again for your time and comments!

Sincerely,
Vlad.



2015-08-28 13:38 GMT-04:00 Peter Blaha :

> You are mixing 2 concepts:
>
> a) Yes, the final state rule applies and thus for XES calculations you
> should NOT use a core hole, but use the ground state DOS.
>
> b) Strictly speaking, only E-tot is a valid quantity in DFT. In
> particular, the eigenvalues are in principle NOT excitation energies.
> However, for delocalized states (eg. valence electrons) experience has
> shown that the eigenvalues (bandstructure,DOS) can be used to interprete
> experimental spectra.
> This is, however, no true for localized states (core states), because
> these eigenvalues are not ionization energies but are defined as the
> derivative of the total energy with respect to occupation of the
> corresponding state.
>  e_i =d E / d n_i
> So one can use "Slaters transition state" approximation and make a
> supercell calculation, where on one atom HALF an electron should be
> removed. After scf, check the eigenvalue (with respect to EF) and you
> should obtain a significantly better binding energy of this core state (and
> the corresponding absolute XES transition energy.
> (Typically the error of a 1s core state is reduced from eg. 10 eV to about
> 1 eV.
> (about XPS energies and Slaters transition state see my lecture notes of
> our workshops on our web site).
>
>
> Am 28.08.2015 um 17:19 schrieb Vladimir Timoshevskii:
>
>> Dear Wien2k users and developers,
>>
>> I am working with experimentalists and try to simulate the XES measured
>> by soft x-ray detector, coupled with electron microscope. So, the
>> ionization source in this setup is the electronic gun of the TEM. The
>> test compound is hexagonal layered BN, which was quite well studied
>> before, including the similar setup. I would greatly appreciate if you
>> could share your opinion on the following 2 issues, which I am facing now:
>>
>> i) Is it possible, in principle, to obtain correct photon energies
>> instead of shifting spectrum by hand to the EF position? I understand,
>> that the position of the core level (B-1s) is sensitive to the form of
>> the potential well, and the closer my potential is to the real one, the
>> better is the position of the core level. I tried different
>> XC-functionals, and found that actually the atomic-like Hartree-Fock
>> gives the best results: the whole spectrum (B K-edge) is shifted to
>> higher energies, closer to experiment, and the spectrum shape is also
>> much better. However, there is still ~10eV shift, relative to the
>> experimental spectrum. So, the XC-functional alone does not solve this
>> problem ...
>>
>> ii) This is a more fundamental question, and is actually related to the
>> first one. I guess, the main reason for the photon energy
>> underestimation is the presence of the core hole, which shifts the
>> ionized core level to lower energies. I did several test calculations of
>> B-K spectrum using supercells of diffferent sizes with a core hole in B
>> 1s. Indeed, by playing with fractional B 1s occupation (trying to catch
>> the "transition state"), it seems to be possible to shift the whole
>> spectrum to experimental position. But in this case, what about the
>> "rule of the final state"? According to this rule, the hole must be
>> created in the valence band (and screened out), and the core lavel must
>> be filled. This is what we normally assume ... Does that mean that the
>> XES calculations with hole in the core are unphysical, in spite of
>> giving better photon energies? May be, the situation here, especially
>> when we use TEM electronic gun for core ionization,  is more
>> complicated? In my opinion, the valence-core transitions are happening
>> in the potential, already distorted by the presence of the core hole. Am
>> I right? Then, how it agrees with the "rule of the final state"? Any
>> thoughts on that would be highly appreciated!
>>
>> Thanks a lot in advance!
>>
>> Vladimir Timoshevskii
>>
>>
>>
>> ___
>> Wien mailing list
>> Wien@zeus.theochem.tuwien.ac.at
>> http://zeus.theochem.

Re: [Wien] Photon energies in XES ...

2015-08-28 Thread Peter Blaha

You are mixing 2 concepts:

a) Yes, the final state rule applies and thus for XES calculations you 
should NOT use a core hole, but use the ground state DOS.


b) Strictly speaking, only E-tot is a valid quantity in DFT. In 
particular, the eigenvalues are in principle NOT excitation energies.
However, for delocalized states (eg. valence electrons) experience has 
shown that the eigenvalues (bandstructure,DOS) can be used to interprete 
experimental spectra.
This is, however, no true for localized states (core states), because 
these eigenvalues are not ionization energies but are defined as the 
derivative of the total energy with respect to occupation of the 
corresponding state.

 e_i =d E / d n_i
So one can use "Slaters transition state" approximation and make a 
supercell calculation, where on one atom HALF an electron should be 
removed. After scf, check the eigenvalue (with respect to EF) and you 
should obtain a significantly better binding energy of this core state 
(and the corresponding absolute XES transition energy.
(Typically the error of a 1s core state is reduced from eg. 10 eV to 
about 1 eV.
(about XPS energies and Slaters transition state see my lecture notes of 
our workshops on our web site).


Am 28.08.2015 um 17:19 schrieb Vladimir Timoshevskii:

Dear Wien2k users and developers,

I am working with experimentalists and try to simulate the XES measured
by soft x-ray detector, coupled with electron microscope. So, the
ionization source in this setup is the electronic gun of the TEM. The
test compound is hexagonal layered BN, which was quite well studied
before, including the similar setup. I would greatly appreciate if you
could share your opinion on the following 2 issues, which I am facing now:

i) Is it possible, in principle, to obtain correct photon energies
instead of shifting spectrum by hand to the EF position? I understand,
that the position of the core level (B-1s) is sensitive to the form of
the potential well, and the closer my potential is to the real one, the
better is the position of the core level. I tried different
XC-functionals, and found that actually the atomic-like Hartree-Fock
gives the best results: the whole spectrum (B K-edge) is shifted to
higher energies, closer to experiment, and the spectrum shape is also
much better. However, there is still ~10eV shift, relative to the
experimental spectrum. So, the XC-functional alone does not solve this
problem ...

ii) This is a more fundamental question, and is actually related to the
first one. I guess, the main reason for the photon energy
underestimation is the presence of the core hole, which shifts the
ionized core level to lower energies. I did several test calculations of
B-K spectrum using supercells of diffferent sizes with a core hole in B
1s. Indeed, by playing with fractional B 1s occupation (trying to catch
the "transition state"), it seems to be possible to shift the whole
spectrum to experimental position. But in this case, what about the
"rule of the final state"? According to this rule, the hole must be
created in the valence band (and screened out), and the core lavel must
be filled. This is what we normally assume ... Does that mean that the
XES calculations with hole in the core are unphysical, in spite of
giving better photon energies? May be, the situation here, especially
when we use TEM electronic gun for core ionization,  is more
complicated? In my opinion, the valence-core transitions are happening
in the potential, already distorted by the presence of the core hole. Am
I right? Then, how it agrees with the "rule of the final state"? Any
thoughts on that would be highly appreciated!

Thanks a lot in advance!

Vladimir Timoshevskii



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Inst.Materials Chemistry
TU Vienna
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Re: [Wien] Photon energies in XES ...

2015-08-28 Thread Laurence Marks
There is a lot of literature on this. Have you looked at (for instance) the
work of Les Allen, as well as the work of the group who wrote the TELNES
script?

N.B., "electron gun", not "electronic gun". Electronic microscope is an all
too common typo.

On Fri, Aug 28, 2015 at 10:19 AM, Vladimir Timoshevskii <
vladi...@physics.mcgill.ca> wrote:

> Dear Wien2k users and developers,
>
> I am working with experimentalists and try to simulate the XES measured by
> soft x-ray detector, coupled with electron microscope. So, the ionization
> source in this setup is the electronic gun of the TEM. The test compound is
> hexagonal layered BN, which was quite well studied before, including the
> similar setup. I would greatly appreciate if you could share your opinion
> on the following 2 issues, which I am facing now:
>
> i) Is it possible, in principle, to obtain correct photon energies instead
> of shifting spectrum by hand to the EF position? I understand, that the
> position of the core level (B-1s) is sensitive to the form of the potential
> well, and the closer my potential is to the real one, the better is the
> position of the core level. I tried different XC-functionals, and found
> that actually the atomic-like Hartree-Fock gives the best results: the
> whole spectrum (B K-edge) is shifted to higher energies, closer to
> experiment, and the spectrum shape is also much better. However, there is
> still ~10eV shift, relative to the experimental spectrum. So, the
> XC-functional alone does not solve this problem ...
>
> ii) This is a more fundamental question, and is actually related to the
> first one. I guess, the main reason for the photon energy underestimation
> is the presence of the core hole, which shifts the ionized core level to
> lower energies. I did several test calculations of B-K spectrum using
> supercells of diffferent sizes with a core hole in B 1s. Indeed, by playing
> with fractional B 1s occupation (trying to catch the "transition state"),
> it seems to be possible to shift the whole spectrum to experimental
> position. But in this case, what about the "rule of the final state"?
> According to this rule, the hole must be created in the valence band (and
> screened out), and the core lavel must be filled. This is what we normally
> assume ... Does that mean that the XES calculations with hole in the core
> are unphysical, in spite of giving better photon energies? May be, the
> situation here, especially when we use TEM electronic gun for core
> ionization,  is more complicated? In my opinion, the valence-core
> transitions are happening in the potential, already distorted by the
> presence of the core hole. Am I right? Then, how it agrees with the "rule
> of the final state"? Any thoughts on that would be highly appreciated!
>
> Thanks a lot in advance!
>
> Vladimir Timoshevskii
>
>
>



-- 
Professor Laurence Marks
Department of Materials Science and Engineering
Northwestern University
www.numis.northwestern.edu
Corrosion in 4D: MURI4D.numis.northwestern.edu
Co-Editor, Acta Cryst A
"Research is to see what everybody else has seen, and to think what nobody
else has thought"
Albert Szent-Gyorgi
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