[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
moved from https://bugs.launchpad.net/yade/+bug/1774065 to
https://gitlab.com/yade-dev/trunk/issues/41
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https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Fix Released
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
I workarounded it on Weekend [1]. I wanted to test it before the commit
into the Yade's trunk. There are really problems with the new numpy
1.14, python 2 and bz2. tar.gz works.
Also there were some problems with the new sphinx [2]. It should also be
backported into the Yade's trunk.
[1] https://salsa.debian.org/science-
team/yade/blob/master/debian/patches/10_fix_bz2_pyhon2_problem.patch
[2] https://salsa.debian.org/science-
team/yade/blob/master/debian/patches/12_fix_doc_generation.patch
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https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Fix Released
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
Bug Watch released a fix?... how?
B
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https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Fix Released
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
** Changed in: debian
Status: Confirmed => Fix Released
--
You received this bug notification because you are a member of Yade
developers, which is subscribed to Yade.
https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Fix Released
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
Workaround is to use tar.gz instead of bz2.
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You received this bug notification because you are a member of Yade
developers, which is subscribed to Yade.
https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Confirmed
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
I have numpy 1.11.0 actually
--
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https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Confirmed
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
@Jérôme
And you have numpy 1.14?
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https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Confirmed
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
I do not confirm it:
jerome.duriez@AXP17003:~$ yadedaily
Welcome to Yade 2018.02b-1270674828~xenial
TCP python prompt on localhost:9000, auth cookie `dckayu'
XMLRPC info provider on http://localhost:21000
[[ ^L clears screen, ^U kills line. F12 controller, F11 3d view (use h-key for
showing help), F10 both, F9 generator, F8 plot. ]]
Yade [1]: from yade import plot
Yade [2]: plot.reset()
Yade [3]: plot.addData(a=1,b=11,c=21,d=31) # add some data here
Yade [4]: plot.saveDataTxt('/tmp/dataFile.txt.bz2',vars=('a','b','c'))
Yade [5]: import numpy
Yade [6]:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Yade [7]: d
-> [7]:
array((1, 11, 21),
dtype=[('a', 'https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Confirmed
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
Thanks for reporting.
The strange part is that numpy 1.14 is still supporting bz2 according to the
documentation.
Could someone confirm "ValueError: bz2 text files not supported in python2" on
his system with the following code:
from yade import plot
plot.reset()
plot.addData(a=1,b=11,c=21,d=31) # add some data here
plot.saveDataTxt('/tmp/dataFile.txt.bz2',vars=('a','b','c'))
import numpy
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Bruno
--
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https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Confirmed
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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https://bugs.launchpad.net/yade/+bug/1774065/+subscriptions
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
** Changed in: debian
Status: Unknown => Confirmed
--
You received this bug notification because you are a member of Yade
developers, which is subscribed to Yade.
https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Confirmed
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
** Bug watch added: Debian Bug tracker #900457
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900457
** Also affects: debian via
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=900457
Importance: Unknown
Status: Unknown
--
You received this bug notification because you are a member of Yade
developers, which is subscribed to Yade.
https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Status in Debian:
Unknown
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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[Yade-dev] [Bug 1774065] Re: doctests fail with numpy 1.14
This was found in Ubuntu autopkgtests (at
https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac
/autopkgtest-cosmic/cosmic/amd64/y/yade/20180529_175759_38e3f@/log.gz)
--
You received this bug notification because you are a member of Yade
developers, which is subscribed to Yade.
https://bugs.launchpad.net/bugs/1774065
Title:
doctests fail with numpy 1.14
Status in Yade:
New
Bug description:
==
FAIL: saveDataTxt (yade.plot)
Doctest: yade.plot.saveDataTxt
--
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2226, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for yade.plot.saveDataTxt
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 614, in
saveDataTxt
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 626, in
yade.plot.saveDataTxt
Failed example:
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d=numpy.genfromtxt('/tmp/dataFile.txt.bz2',dtype=None,names=True)
File "/usr/lib/python2.7/dist-packages/numpy/lib/npyio.py", line 1689,
in genfromtxt
fhd = iter(np.lib._datasource.open(fname, 'rt', encoding=encoding))
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
260, in open
return ds.open(path, mode, encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
614, in open
encoding=encoding, newline=newline)
File "/usr/lib/python2.7/dist-packages/numpy/lib/_datasource.py", line
88, in _python2_bz2open
raise ValueError("bz2 text files not supported in python2")
ValueError: bz2 text files not supported in python2
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 627, in
yade.plot.saveDataTxt
Failed example:
d['a']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['a']
NameError: name 'd' is not defined
--
File "/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py", line 629, in
yade.plot.saveDataTxt
Failed example:
d['b']
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1315, in __run
compileflags, 1) in test.globs
File "", line 1, in
d['b']
NameError: name 'd' is not defined
--
Ran 58 tests in 1.063s
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