In case anyone is following this:

I found MySQL didn't always use the new index, even when it
improved performance (at least in the cases I checked), but
this was resolved by removing the previous index (which was
redundant at this point, anyway):

ALTER TABLE smw_rels2 DROP INDEX o_id;


Excerpts from Daniel Ring's message of Fri Sep 24 16:31:30 -0400 2010:
> I've made a bit of progress, I think:
> 
> Adding this composite index to smw_rels2 appears to decrease the
> time of the 'SELECT DISTINCT...' query to about 10% of original,
> and decreases the time of the 'runJobs' jobs to about 20-25%.
> 
> ALTER TABLE smw_rels2 ADD INDEX idx_o_id_p_id USING BTREE (o_id, p_id);
> 
> I assume this could replace the existing index on o_id, but I have
> not actually tried it.  I also don't know what compatibility issues
> arise with composite indexes.
> 
> Excerpts from Daniel Ring's message of Tue Sep 21 13:38:59 -0400 2010:
> > I'm having an issue with seemingly slow and redundant queries during
> > runJobs.  I'm using MW 1.15.5 and SMW 1.5.2, upgraded from 1.15.1 and
> > 1.5.1 respectively.  (The upgrade didn't noticably change the speed 
> > or redundancy).
> > 
> > There are a few templates which are used by many pages, the worst
> > case so far being ~120k uses of a single template which turns the
> > ~15 template parameters into ~10 properties, a category, and a page.
> > It uses #if and uses other templates, (wrapping the other template
> > calls in 'noinclude' doesn't appear to affect the runtime) and is
> > basically unremarkable.
> > 
> > So, running 'runJobs' gives output like the following:
> > 
> > With --procs=1
> > 
> > 
> >   2010-09-21 16:14:17 refreshLinks2 Template:TX_Facility start=361172 
> > end=362192 t=2407915 good
> >   2010-09-21 16:53:19 refreshLinks2 Template:TX_Facility start=362193 
> > end=363233 t=2341932 good
> > 
> > (E.g. ~40min per refreshLinks2 with start-end range ~1000)
> > 
> > With --procs=? (I don't remember, but with --procs=1, these were
> > t=~3500 and increase proportionally with procs, so I think the DB
> > is the bottleneck.)
> > 
> > 
> >   2010-09-18 14:00:07 refreshLinks 42-009-34059_(TX_Facility) t=22856 good
> >   2010-09-18 14:00:35 refreshLinks 42-001-31705_(TX_Facility) t=28058 good
> >   2010-09-18 14:01:04 refreshLinks 42-003-01936_(TX_Facility) t=28900 good
> > 
> > 
> > Watching the SQL log, I see it pause at this query:
> >   SELECT /* SMW::getInProperties 127.0.0.1 */  DISTINCT 
> > smw_title,smw_sortkey
> >     FROM `smw_ids` INNER JOIN `smw_rels2` AS t1 ON t1.p_id=smw_id  WHERE 
> > t1.o_id='42720'
> > 
> > 
> > And in the MySQL shell I get:
> > 
> > 
> > mysql> SELECT    DISTINCT smw_title,smw_sortkey   FROM `smw_ids` INNER JOIN 
> > `smw_rels2` AS t1 ON t1.p_id=smw_id  WHERE t1.o_id='42720';
> > +--------------+--------------+
> > | smw_title    | smw_sortkey  |
> > +--------------+--------------+
> > | Well_number  | Well number  | 
> > | State_number | State number | 
> > +--------------+--------------+
> > 2 rows in set (5.98 sec)
> > 
> > mysql> SELECT    COUNT(*)   FROM `smw_ids` INNER JOIN `smw_rels2` AS t1 ON 
> > t1.p_id=smw_id  WHERE t1.o_id='42720';
> > +----------+
> > | COUNT(*) |
> > +----------+
> > |   123037 | 
> > +----------+
> > 1 row in set (5.56 sec)
> > 
> > 
> > The redundancy is that the SELECT DISTINCT output is the same
> > every time.  MySQL query cache is on, and Memcached is used, but
> > neither made a noticable difference.  (I assume some other query
> > during runJobs invalidates it...)
> > 
> > So, is this a bug or am I doing something totally wrong?
> > 
> > Thanks,
> > Dan

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