Re: problems upgading james

Fri, 30 Mar 2007 02:28:49 -0800 


On 30.03.2007, at 12:22, Stefano Bagnara wrote:


zkn ha scritto:
Have in mind that this MYOWN directory contains a really big tree of folders and files - ~50GB. It will be really slow even if james| phoenix tries only to go trough all of them. I think that's all I can give as information. If your are not able to help me I will have to keep using 2.2. 

Everything bring us to something weird in the new phoenix.
It seems that the James code is not even reached when you are waiting.
Can you give us a stacktrace of phoenix (kill -3 <pid> or jstack <pid>) while you "wait" for the folder scan? If you take a couple of them during this wait period it will help us.
I executed kill -3 three times and the result is below. Seems like the problem is here: org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) 

STARTED Phoenix Fri Mar 30 03:13:04 PDT 2007

Phoenix 4.2

Full thread dump Java HotSpot(TM) Client VM (1.4.2_13-b06 mixed mode):
"Thread-0" daemon prio=1 tid=0xaa4e5880 nid=0x6591 waiting on condition [0xaa102000..0xaa102868] 
        at java.lang.Thread.sleep(Native Method)
at org.apache.avalon.excalibur.monitor.impl.ActiveMonitor.run (ActiveMonitor.java:101) 
        at java.lang.Thread.run(Thread.java:534)
"Signal Dispatcher" daemon prio=1 tid=0xaab14470 nid=0x658e waiting on condition [0x00000000..0x00000000]
"Finalizer" daemon prio=1 tid=0xaab00690 nid=0x658c in Object.wait() [0xaacad000..0xaacad868] 
        at java.lang.Object.wait(Native Method)
        - waiting on <0xab31f998> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:111)
        - locked <0xab31f998> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:127)
        at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)
"Reference Handler" daemon prio=1 tid=0x0808d770 nid=0x658b in Object.wait() [0xaad2e000..0xaad2e868] 
        at java.lang.Object.wait(Native Method)
        - waiting on <0xab31fa00> (a java.lang.ref.Reference$Lock)
        at java.lang.Object.wait(Object.java:429)
        at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:115)
        - locked <0xab31fa00> (a java.lang.ref.Reference$Lock)
"main" prio=1 tid=0x08057c98 nid=0x6588 runnable [0xbfffa000..0xbfffbeb8] 
        at java.io.ExpiringCache.cleanup(ExpiringCache.java:99)
        at java.io.ExpiringCache.get(ExpiringCache.java:51)
        - locked <0xab3224f8> (a java.io.ExpiringCache)
        at java.io.UnixFileSystem.canonicalize(UnixFileSystem.java:137)
        at java.io.File.getCanonicalPath(File.java:513)
        at java.io.FilePermission$1.run(FilePermission.java:218)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.io.FilePermission.init(FilePermission.java:212)
        at java.io.FilePermission.<init>(FilePermission.java:264)
        at java.lang.SecurityManager.checkRead(SecurityManager.java:863)
        at java.io.File.isDirectory(File.java:699)
at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:168) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.r esolveFileSet(DefaultLoaderResolver.java:131) at org.apache.avalon.phoenix.components.classloader.SarLoaderResolver.resol veFileSet(SarLoaderResolver.java:169) at org.realityforge.classman.builder.LoaderBuilder.buildRegularClassLoader( LoaderBuilder.java:210) at org.realityforge.classman.builder.LoaderBuilder.processClassLoader (LoaderBuilder.java:126) at org.realityforge.classman.builder.LoaderBuilder.addAllClassLoaders (LoaderBuilder.java:71) at org.realityforge.classman.builder.LoaderBuilder.buildClassLoaders (LoaderBuilder.java:48) at org.apache.avalon.phoenix.components.classloader.DefaultClassLoaderManag er.createClassLoaderSet(DefaultClassLoaderManager.java:233) at org.apache.avalon.phoenix.components.deployer.DefaultDeployer.deploy (DefaultDeployer.java:331) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile (DefaultEmbeddor.java:542) - locked <0xab343058> (a org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile (DefaultEmbeddor.java:535) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile s(DefaultEmbeddor.java:520) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployDefa ultApplications(DefaultEmbeddor.java:509) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.execute (DefaultEmbeddor.java:268) 
        at org.apache.avalon.phoenix.frontends.CLIMain.run(CLIMain.java:198)
at org.apache.avalon.phoenix.frontends.CLIMain.execute(CLIMain.java: 184) 
        at org.apache.avalon.phoenix.frontends.CLIMain.main(CLIMain.java:145)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:25) 
        at java.lang.reflect.Method.invoke(Method.java:324)
        at org.apache.avalon.phoenix.launcher.Main.startup(Main.java:128)
        at org.apache.avalon.phoenix.launcher.Main.main(Main.java:83)

"VM Thread" prio=1 tid=0x0808c508 nid=0x658a runnable
"VM Periodic Task Thread" prio=1 tid=0xaab16c88 nid=0x6590 waiting on condition 
"Suspend Checker Thread" prio=1 tid=0xaab139c8 nid=0x658d runnable
Full thread dump Java HotSpot(TM) Client VM (1.4.2_13-b06 mixed mode):
"Thread-0" daemon prio=1 tid=0xaa4e5880 nid=0x6591 waiting on condition [0xaa102000..0xaa102868] 
        at java.lang.Thread.sleep(Native Method)
at org.apache.avalon.excalibur.monitor.impl.ActiveMonitor.run (ActiveMonitor.java:101) 
        at java.lang.Thread.run(Thread.java:534)
"Signal Dispatcher" daemon prio=1 tid=0xaab14470 nid=0x658e waiting on condition [0x00000000..0x00000000]
"Finalizer" daemon prio=1 tid=0xaab00690 nid=0x658c in Object.wait() [0xaacad000..0xaacad868] 
        at java.lang.Object.wait(Native Method)
        - waiting on <0xab31f998> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:111)
        - locked <0xab31f998> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:127)
        at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)
"Reference Handler" daemon prio=1 tid=0x0808d770 nid=0x658b in Object.wait() [0xaad2e000..0xaad2e868] 
        at java.lang.Object.wait(Native Method)
        - waiting on <0xab31fa00> (a java.lang.ref.Reference$Lock)
        at java.lang.Object.wait(Object.java:429)
        at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:115)
        - locked <0xab31fa00> (a java.lang.ref.Reference$Lock)
"main" prio=1 tid=0x08057c98 nid=0x6588 runnable [0xbfffa000..0xbfffbeb8] 
        at java.security.AccessController.doPrivileged(Native Method)
        at java.io.FilePermission.init(FilePermission.java:212)
        at java.io.FilePermission.<init>(FilePermission.java:264)
        at java.lang.SecurityManager.checkRead(SecurityManager.java:863)
        at java.io.File.isDirectory(File.java:699)
at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:168) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.r esolveFileSet(DefaultLoaderResolver.java:131) at org.apache.avalon.phoenix.components.classloader.SarLoaderResolver.resol veFileSet(SarLoaderResolver.java:169) at org.realityforge.classman.builder.LoaderBuilder.buildRegularClassLoader( LoaderBuilder.java:210) at org.realityforge.classman.builder.LoaderBuilder.processClassLoader (LoaderBuilder.java:126) at org.realityforge.classman.builder.LoaderBuilder.addAllClassLoaders (LoaderBuilder.java:71) at org.realityforge.classman.builder.LoaderBuilder.buildClassLoaders (LoaderBuilder.java:48) at org.apache.avalon.phoenix.components.classloader.DefaultClassLoaderManag er.createClassLoaderSet(DefaultClassLoaderManager.java:233) at org.apache.avalon.phoenix.components.deployer.DefaultDeployer.deploy (DefaultDeployer.java:331) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile (DefaultEmbeddor.java:542) - locked <0xab343058> (a org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile (DefaultEmbeddor.java:535) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile s(DefaultEmbeddor.java:520) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployDefa ultApplications(DefaultEmbeddor.java:509) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.execute (DefaultEmbeddor.java:268) 
        at org.apache.avalon.phoenix.frontends.CLIMain.run(CLIMain.java:198)
at org.apache.avalon.phoenix.frontends.CLIMain.execute(CLIMain.java: 184) 
        at org.apache.avalon.phoenix.frontends.CLIMain.main(CLIMain.java:145)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:25) 
        at java.lang.reflect.Method.invoke(Method.java:324)
        at org.apache.avalon.phoenix.launcher.Main.startup(Main.java:128)
        at org.apache.avalon.phoenix.launcher.Main.main(Main.java:83)

"VM Thread" prio=1 tid=0x0808c508 nid=0x658a runnable
"VM Periodic Task Thread" prio=1 tid=0xaab16c88 nid=0x6590 waiting on condition 
"Suspend Checker Thread" prio=1 tid=0xaab139c8 nid=0x658d runnable
Full thread dump Java HotSpot(TM) Client VM (1.4.2_13-b06 mixed mode):
"Thread-0" daemon prio=1 tid=0xaa4e5880 nid=0x6591 waiting on condition [0xaa102000..0xaa102868] 
        at java.lang.Thread.sleep(Native Method)
at org.apache.avalon.excalibur.monitor.impl.ActiveMonitor.run (ActiveMonitor.java:101) 
        at java.lang.Thread.run(Thread.java:534)
"Signal Dispatcher" daemon prio=1 tid=0xaab14470 nid=0x658e waiting on condition [0x00000000..0x00000000]
"Finalizer" daemon prio=1 tid=0xaab00690 nid=0x658c in Object.wait() [0xaacad000..0xaacad868] 
        at java.lang.Object.wait(Native Method)
        - waiting on <0xab31f998> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:111)
        - locked <0xab31f998> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:127)
        at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)
"Reference Handler" daemon prio=1 tid=0x0808d770 nid=0x658b in Object.wait() [0xaad2e000..0xaad2e868] 
        at java.lang.Object.wait(Native Method)
        - waiting on <0xab31fa00> (a java.lang.ref.Reference$Lock)
        at java.lang.Object.wait(Object.java:429)
        at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:115)
        - locked <0xab31fa00> (a java.lang.ref.Reference$Lock)
"main" prio=1 tid=0x08057c98 nid=0x6588 runnable [0xbfffa000..0xbfffbeb8] 
        at java.security.AccessController.doPrivileged(Native Method)
        at java.io.FilePermission.init(FilePermission.java:212)
        at java.io.FilePermission.<init>(FilePermission.java:264)
        at java.lang.SecurityManager.checkRead(SecurityManager.java:863)
        at java.io.File.isDirectory(File.java:699)
at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:168) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.s canDir(DefaultLoaderResolver.java:170) at org.apache.avalon.phoenix.components.classloader.DefaultLoaderResolver.r esolveFileSet(DefaultLoaderResolver.java:131) at org.apache.avalon.phoenix.components.classloader.SarLoaderResolver.resol veFileSet(SarLoaderResolver.java:169) at org.realityforge.classman.builder.LoaderBuilder.buildRegularClassLoader( LoaderBuilder.java:210) at org.realityforge.classman.builder.LoaderBuilder.processClassLoader (LoaderBuilder.java:126) at org.realityforge.classman.builder.LoaderBuilder.addAllClassLoaders (LoaderBuilder.java:71) at org.realityforge.classman.builder.LoaderBuilder.buildClassLoaders (LoaderBuilder.java:48) at org.apache.avalon.phoenix.components.classloader.DefaultClassLoaderManag er.createClassLoaderSet(DefaultClassLoaderManager.java:233) at org.apache.avalon.phoenix.components.deployer.DefaultDeployer.deploy (DefaultDeployer.java:331) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile (DefaultEmbeddor.java:542) - locked <0xab343058> (a org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile (DefaultEmbeddor.java:535) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployFile s(DefaultEmbeddor.java:520) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.deployDefa ultApplications(DefaultEmbeddor.java:509) at org.apache.avalon.phoenix.components.embeddor.DefaultEmbeddor.execute (DefaultEmbeddor.java:268) 
        at org.apache.avalon.phoenix.frontends.CLIMain.run(CLIMain.java:198)
at org.apache.avalon.phoenix.frontends.CLIMain.execute(CLIMain.java: 184) 
        at org.apache.avalon.phoenix.frontends.CLIMain.main(CLIMain.java:145)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:25) 
        at java.lang.reflect.Method.invoke(Method.java:324)
        at org.apache.avalon.phoenix.launcher.Main.startup(Main.java:128)
        at org.apache.avalon.phoenix.launcher.Main.main(Main.java:83)

"VM Thread" prio=1 tid=0x0808c508 nid=0x658a runnable
"VM Periodic Task Thread" prio=1 tid=0xaab16c88 nid=0x6590 waiting on condition 
"Suspend Checker Thread" prio=1 tid=0xaab139c8 nid=0x658d runnable
JVM exiting abnormally. Shutting down Phoenix.
STOPPED Fri Mar 30 03:18:05 PDT 2007
Furthermore if you can check if James uses 100% or simply wait during this startup it would help.
CPU usage for the java process seems fine but there is a big iowait which stopped when I stopped james.
Furthermore feel free to open a JIRA issue so we can keep track of this bug while we try to solve it. 


OK


Stefano


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